RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 STOX1Q6ZVD7 989 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 CCDC17Q96LX7 622 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 DEFB118Q96PH6 123 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 WDR18Q9BV38 432 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 ZNF287Q9HBT7 754 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 SLC45A1Q9Y2W3 748 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 NEDD4P46934 1319 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 IGKV6D-41A0A0C4DH26 115 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 A0A1W2PRG0 241 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 E7EWF7 191 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 H0YGN5 161 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 RAD21O60216 631 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 HAND2P61296 217 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 ATP2B2Q01814 1243 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 PDE4BQ07343 736 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 SH3D19Q5HYK7 790 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 RNF20Q5VTR2 975 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 SPICE1Q8N0Z3 855 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 NKX2-3Q8TAU0 364 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 TRIB2Q92519 343 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 DPF3Q92784 378 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 COA7Q96BR5 231 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS53-203ENST00000401468 RNF41Q9H4P4 317 aaPredicted RBP10.84□□□□□ -0.67
VPS53-203ENST00000401468 CNNM2Q9H8M5 875 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 RBPJLQ9UBG7 517 aa10.84□□□□□ -0.67
VPS53-203ENST00000401468 CNMDO75829 334 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 GNRH1P01148 92 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 TFRCP02786 760 aaKnown RBP10.83□□□□□ -0.68
VPS53-203ENST00000401468 VCAM1P19320 739 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 SLC4A3P48751 1232 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 PRMT2P55345 433 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 UBXN2AP68543 259 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 PTGDRQ13258 359 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 KRT32Q14532 448 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 TJAP1Q5JTD0 557 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 USP17L2Q6R6M4 530 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 MFSD6Q6ZSS7 791 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 MB21D2Q8IYB1 491 aaPredicted RBP10.83□□□□□ -0.68
VPS53-203ENST00000401468 FBXL16Q8N461 479 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 U2AF1L4Q8WU68 220 aaKnown RBP10.83□□□□□ -0.68
VPS53-203ENST00000401468 MTRQ99707 1265 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 MTA3Q9BTC8 594 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 TM6SF1Q9BZW5 370 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 RPAP3Q9H6T3 665 aaPredicted RBP10.83□□□□□ -0.68
VPS53-203ENST00000401468 TCP11L1Q9NUJ3 509 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 SNX14Q9Y5W7 946 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 WDR19Q8NEZ3 1342 aa10.83□□□□□ -0.68
VPS53-203ENST00000401468 LCTP09848 1927 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 FARP2O94887 1054 aaPredicted RBP10.82□□□□□ -0.68
VPS53-203ENST00000401468 ZKSCAN1P17029 563 aaPredicted RBP10.82□□□□□ -0.68
VPS53-203ENST00000401468 ERVK-9P63128 1117 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 ERVK-24P63145 666 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 PLCB2Q00722 1185 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 PABPC4Q13310 644 aaKnown RBP eCLIP10.82□□□□□ -0.68
VPS53-203ENST00000401468 COL9A3Q14050 684 aaPredicted RBP10.82□□□□□ -0.68
VPS53-203ENST00000401468 ADCK5Q3MIX3 580 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 TMEM179Q6ZVK1 233 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 NEDD1Q8NHV4 660 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 ESR2Q92731 530 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 TBC1D32Q96NH3 1257 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 TBC1D2Q9BYX2 928 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 KRT23Q9C075 422 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 TANGO6Q9C0B7 1094 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 INCENPQ9NQS7 918 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 BTBD7Q9P203 1132 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 GJD2Q9UKL4 321 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 SYNPO2Q9UMS6 1093 aa10.82□□□□□ -0.68
VPS53-203ENST00000401468 C19orf81C9J6K1 198 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 GJB1P08034 283 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 MCCP23508 829 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 CCND3P30281 292 aaPredicted RBP10.81□□□□□ -0.68
VPS53-203ENST00000401468 GJA8P48165 433 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 GCLCP48506 637 aaPredicted RBP10.81□□□□□ -0.68
VPS53-203ENST00000401468 ANTXR2P58335 489 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 CCAR1Q8IX12 1150 aaKnown RBP10.81□□□□□ -0.68
VPS53-203ENST00000401468 GPRC5AQ8NFJ5 357 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 NCOA7Q8NI08 942 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 ANKS1AQ92625 1134 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 MKL1Q969V6 931 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 KIF2CQ99661 725 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.81□□□□□ -0.68
VPS53-203ENST00000401468 IL21Q9HBE4 155 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 MKNK2Q9HBH9 465 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 CWC22Q9HCG8 908 aaKnown RBP10.81□□□□□ -0.68
VPS53-203ENST00000401468 CABP5Q9NP86 173 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 IL17RBQ9NRM6 502 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 FLRT1Q9NZU1 646 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 ZSWIM5Q9P217 1185 aa10.81□□□□□ -0.68
VPS53-203ENST00000401468 ZNF236Q9UL36 1845 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 PRDM1O75626 825 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 SGPL1O95470 568 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 HMGB1P09429 215 aaKnown RBP10.8□□□□□ -0.68
VPS53-203ENST00000401468 HOXA7P31268 230 aaPredicted RBP10.8□□□□□ -0.68
VPS53-203ENST00000401468 EXOSC10Q01780 885 aaKnown RBP10.8□□□□□ -0.68
VPS53-203ENST00000401468 PLS1Q14651 629 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 RCSD1Q6JBY9 416 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 GPR142Q7Z601 462 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 SIAH1Q8IUQ4 282 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 ZNF444Q8N0Y2 327 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms