RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 GRAMD1CQ8IYS0 662 aa24.43■■□□□ 1.5
TRIM54-202ENST00000380075 CCAR2Q8N163 923 aaKnown RBP24.43■■□□□ 1.5
TRIM54-202ENST00000380075 OGFOD1Q8N543 542 aa24.43■■□□□ 1.5
TRIM54-202ENST00000380075 NFE2L3Q9Y4A8 694 aa24.43■■□□□ 1.5
TRIM54-202ENST00000380075 PLIN4Q96Q06 1357 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 CCDC194A0A1B0GVG4 234 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 H7C1D1 291 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 EGFRP00533 1210 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 TOP1P11387 765 aaKnown RBP24.42■■□□□ 1.5
TRIM54-202ENST00000380075 VEGFAP15692 232 aaPredicted RBP24.42■■□□□ 1.5
TRIM54-202ENST00000380075 MCM7P33993 719 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 DPYDQ12882 1025 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 NYAP1Q6ZVC0 841 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 SAMD7Q7Z3H4 446 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 TXLNAP40222 546 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 ZNF280AP59817 542 aaPredicted RBP24.42■■□□□ 1.5
TRIM54-202ENST00000380075 WWC2Q6AWC2 1192 aa24.42■■□□□ 1.5
TRIM54-202ENST00000380075 GPKOWQ92917 476 aaPredicted RBP eCLIP24.42■■□□□ 1.5
TRIM54-202ENST00000380075 STXBP3O00186 592 aa24.41■■□□□ 1.5
TRIM54-202ENST00000380075 LAD1O00515 517 aa24.41■■□□□ 1.5
TRIM54-202ENST00000380075 RIOK3O14730 519 aaKnown RBP24.41■■□□□ 1.5
TRIM54-202ENST00000380075 PARP1P09874 1014 aaKnown RBP24.41■■□□□ 1.5
TRIM54-202ENST00000380075 FMR1Q06787 632 aaKnown RBP eCLIP24.41■■□□□ 1.5
TRIM54-202ENST00000380075 PTPN14Q15678 1187 aa24.41■■□□□ 1.5
TRIM54-202ENST00000380075 E2F4Q16254 413 aa24.41■■□□□ 1.5
TRIM54-202ENST00000380075 RBM26Q5T8P6 1007 aaKnown RBP24.41■■□□□ 1.5
TRIM54-202ENST00000380075 GPBP1L1Q9HC44 474 aaPredicted RBP24.41■■□□□ 1.5
TRIM54-202ENST00000380075 DAGLAQ9Y4D2 1042 aa24.41■■□□□ 1.5
TRIM54-202ENST00000380075 FOCADQ5VW36 1801 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 IQCA1LA6NCM1 817 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 KLRF2D3W0D1 207 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 CCP110O43303 1012 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 CYTH3O43739 400 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 TBC1D10BQ4KMP7 808 aaPredicted RBP24.4■■□□□ 1.5
TRIM54-202ENST00000380075 C4orf32Q8N8J7 132 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 PDCL3Q9H2J4 239 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 HDAC9Q9UKV0 1011 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 PCDHAC2Q9Y5I4 1007 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 WDR90Q96KV7 1748 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 TUBB4AP04350 444 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 EPHX2P34913 555 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 CEP135Q66GS9 1140 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 HEATR3Q7Z4Q2 680 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 ZNF784Q8NCA9 323 aaPredicted RBP24.4■■□□□ 1.5
TRIM54-202ENST00000380075 TAF1DQ9H5J8 278 aaPredicted RBP24.4■■□□□ 1.5
TRIM54-202ENST00000380075 MYOZ2Q9NPC6 264 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 PCDHA6Q9UN73 950 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 PCDHA8Q9Y5H6 950 aa24.4■■□□□ 1.5
TRIM54-202ENST00000380075 CDK11BP21127 795 aaKnown RBP24.39■■□□□ 1.49
TRIM54-202ENST00000380075 AFMP43652 599 aa24.39■■□□□ 1.49
TRIM54-202ENST00000380075 SLC35G1Q2M3R5 365 aa24.39■■□□□ 1.49
TRIM54-202ENST00000380075 TRPM4Q8TD43 1214 aa24.39■■□□□ 1.49
TRIM54-202ENST00000380075 ADARB2Q9NS39 739 aaKnown RBP24.39■■□□□ 1.49
TRIM54-202ENST00000380075 SPATA1Q5VX52 437 aa24.38■■□□□ 1.49
TRIM54-202ENST00000380075 TYW1BQ6NUM6 668 aa24.38■■□□□ 1.49
TRIM54-202ENST00000380075 ZMYND12Q9H0C1 365 aa24.38■■□□□ 1.49
TRIM54-202ENST00000380075 MYH1P12882 1939 aa24.38■■□□□ 1.49
TRIM54-202ENST00000380075 hCG_1984214I3L0E3 225 aa24.38■■□□□ 1.49
TRIM54-202ENST00000380075 GTPBP6O43824 516 aaPredicted RBP24.38■■□□□ 1.49
TRIM54-202ENST00000380075 PDXDC2PQ6P474 469 aa24.38■■□□□ 1.49
TRIM54-202ENST00000380075 ZNF713Q8N859 430 aaPredicted RBP24.38■■□□□ 1.49
TRIM54-202ENST00000380075 PRPHP41219 470 aa24.37■■□□□ 1.49
TRIM54-202ENST00000380075 CRKP46108 304 aa24.37■■□□□ 1.49
TRIM54-202ENST00000380075 RBM5P52756 815 aaKnown RBP eCLIP24.37■■□□□ 1.49
TRIM54-202ENST00000380075 HIRAP54198 1017 aaPredicted RBP24.37■■□□□ 1.49
TRIM54-202ENST00000380075 IL17AQ16552 155 aa24.37■■□□□ 1.49
TRIM54-202ENST00000380075 KRT25Q7Z3Z0 450 aa24.37■■□□□ 1.49
TRIM54-202ENST00000380075 RRP36Q96EU6 259 aaKnown RBP24.37■■□□□ 1.49
TRIM54-202ENST00000380075 SERPINA10Q9UK55 444 aa24.37■■□□□ 1.49
TRIM54-202ENST00000380075 USP27XA6NNY8 438 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 CTIFO43310 598 aaKnown RBP24.36■■□□□ 1.49
TRIM54-202ENST00000380075 GNA11P29992 359 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 SEMA3FQ13275 785 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 CUL4BQ13620 913 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 CEP95Q96GE4 821 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 TMX1Q9H3N1 280 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 RMND1Q9NWS8 449 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 SYNRGQ9UMZ2 1314 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 ADAMTS3O15072 1205 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 MMP14P50281 582 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 GABPAQ06546 454 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 KIF4BQ2VIQ3 1234 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 DTHD1Q6ZMT9 781 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 TEKT1Q969V4 418 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 C6orf50Q9HD87 102 aa24.36■■□□□ 1.49
TRIM54-202ENST00000380075 SEC63Q9UGP8 760 aaKnown RBP24.36■■□□□ 1.49
TRIM54-202ENST00000380075 HDLBPQ00341 1268 aaKnown RBP24.35■■□□□ 1.49
TRIM54-202ENST00000380075 ORC2Q13416 577 aaPredicted RBP24.35■■□□□ 1.49
TRIM54-202ENST00000380075 E4F1Q66K89 784 aaPredicted RBP24.35■■□□□ 1.49
TRIM54-202ENST00000380075 FCHSD1Q86WN1 690 aa24.35■■□□□ 1.49
TRIM54-202ENST00000380075 MRIQ9BWK5 157 aa24.35■■□□□ 1.49
TRIM54-202ENST00000380075 INTS13Q9NVM9 706 aa24.35■■□□□ 1.49
TRIM54-202ENST00000380075 SWAP70Q9UH65 585 aa24.35■■□□□ 1.49
TRIM54-202ENST00000380075 ESYT2A0FGR8 921 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 TBX2Q13207 712 aaPredicted RBP24.34■■□□□ 1.49
TRIM54-202ENST00000380075 DLGAP5Q15398 846 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 SYCP1Q15431 976 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 NBPF9Q3BBW0 867 aa24.34■■□□□ 1.49
TRIM54-202ENST00000380075 EAPPQ56P03 285 aaPredicted RBP24.34■■□□□ 1.49
TRIM54-202ENST00000380075 TRMT44Q8IYL2 757 aaKnown RBP24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms