RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 DTHD1Q6ZMT9 781 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 IGSF22Q8N9C0 903 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 NELFBQ8WX92 580 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 ERO1AQ96HE7 468 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 CRAMP1Q96RY5 1269 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 PARP3Q9Y6F1 533 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 SMCO2A6NFE2 343 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 AKR1B1P15121 316 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 ERCC6LQ2NKX8 1250 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 KCNQ5Q9NR82 932 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 RWDD2AQ9UIY3 292 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 NAPAP54920 295 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 CCDC178Q5BJE1 867 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 FBXO38Q6PIJ6 1188 aa15.12■□□□□ 0.01
CCDC3-202ENST00000378839 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.12■□□□□ 0.01
CCDC3-202ENST00000378839 PHLPP2Q6ZVD8 1323 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 LRRC10BA6NIK2 292 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 PPEF1O14829 653 aaPredicted RBP15.11■□□□□ 0.01
CCDC3-202ENST00000378839 PDHBP11177 359 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 CASP14P31944 242 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 TXNRD1Q16881 649 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 LETM2Q2VYF4 491 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 FCHSD1Q86WN1 690 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 LRRC47Q8N1G4 583 aaKnown RBP15.11■□□□□ 0.01
CCDC3-202ENST00000378839 VPS16Q9H269 839 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 BIN2Q9UBW5 565 aaPredicted RBP15.11■□□□□ 0.01
CCDC3-202ENST00000378839 LIMA1Q9UHB6 759 aaKnown RBP15.11■□□□□ 0.01
CCDC3-202ENST00000378839 PCDHAC2Q9Y5I4 1007 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 BRWD3Q6RI45 1802 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 AKR1B15C9JRZ8 316 aaPredicted RBP15.11■□□□□ 0.01
CCDC3-202ENST00000378839 NKRFO15226 690 aaKnown RBP eCLIP15.11■□□□□ 0.01
CCDC3-202ENST00000378839 ABL1P00519 1130 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 DOK7Q18PE1 504 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 MMTAG2Q9BU76 263 aaKnown RBP15.11■□□□□ 0.01
CCDC3-202ENST00000378839 KBTBD4Q9NVX7 518 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 TAB2Q9NYJ8 693 aa15.11■□□□□ 0.01
CCDC3-202ENST00000378839 CCNT1O60563 726 aaKnown RBP15.1■□□□□ 0.01
CCDC3-202ENST00000378839 PAK1Q13153 545 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 SHROOM1Q2M3G4 852 aaPredicted RBP15.1■□□□□ 0.01
CCDC3-202ENST00000378839 ADSSL1Q8N142 457 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 CCDC148Q8NFR7 591 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 KIFC2Q96AC6 838 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 MTMR4Q9NYA4 1195 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 IGKV6D-41A0A0C4DH26 115 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 NT5C2P49902 561 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 SCNN1DP51172 638 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 ZFPM1Q8IX07 1006 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 SP8Q8IXZ3 490 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 COA7Q96BR5 231 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 ZNF446Q9NWS9 450 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 NRDCO43847 1150 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 PPP1R11O60927 126 aaPredicted RBP15.1■□□□□ 0.01
CCDC3-202ENST00000378839 MFAP3LO75121 409 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 PLCG1P19174 1290 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 TCP11X2Q5H9J9 407 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 SLC27A3Q5K4L6 730 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 JAKMIP3Q5VZ66 844 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 GALNT17Q6IS24 598 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 EEF2KMTQ96G04 330 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 CCDC34Q96HJ3 373 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 PANX2Q96RD6 677 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 LZTS2Q9BRK4 669 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 CCSER1Q9C0I3 900 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 RIOX1Q9H6W3 641 aa15.1■□□□□ 0.01
CCDC3-202ENST00000378839 DPP8Q6V1X1 898 aaPredicted RBP15.09■□□□□ 0.01
CCDC3-202ENST00000378839 POTEDQ86YR6 584 aa15.09■□□□□ 0.01
CCDC3-202ENST00000378839 TBCKQ8TEA7 893 aa15.09■□□□□ 0.01
CCDC3-202ENST00000378839 ATP6V0A2Q9Y487 856 aa15.09■□□□□ 0.01
CCDC3-202ENST00000378839 KCNJ18B7U540 433 aa15.09■□□□□ 0.01
CCDC3-202ENST00000378839 COPB1P53618 953 aaKnown RBP15.09■□□□□ 0.01
CCDC3-202ENST00000378839 KCNJ12Q14500 433 aa15.09■□□□□ 0.01
CCDC3-202ENST00000378839 PLCG2P16885 1265 aa15.08■□□□□ 0.01
CCDC3-202ENST00000378839 RXRBP28702 533 aa15.08■□□□□ 0.01
CCDC3-202ENST00000378839 TECP42680 631 aa15.08■□□□□ 0.01
CCDC3-202ENST00000378839 TBC1D22AQ8WUA7 517 aa15.08■□□□□ 0.01
CCDC3-202ENST00000378839 HPS3Q969F9 1004 aa15.08■□□□□ 0.01
CCDC3-202ENST00000378839 RRP36Q96EU6 259 aaKnown RBP15.08■□□□□ 0.01
CCDC3-202ENST00000378839 EPC1Q9H2F5 836 aa15.08■□□□□ 0.01
CCDC3-202ENST00000378839 ZSCAN12O43309 604 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 SRGNP10124 158 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 ERVK-24P63145 666 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 NFIAQ12857 509 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 TTBK2Q6IQ55 1244 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 CREBRFQ8IUR6 639 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 ZNF287Q9HBT7 754 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 ADGRG1Q9Y653 693 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 PLIN4Q96Q06 1357 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 SLC37A4O43826 429 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 URI1O94763 535 aaPredicted RBP15.08■□□□□ 0
CCDC3-202ENST00000378839 SHMT1P34896 483 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 PRPHP41219 470 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 UBA7P41226 1012 aa15.08■□□□□ 0
CCDC3-202ENST00000378839 NONOQ15233 471 aaKnown RBP eCLIP15.08■□□□□ 0
CCDC3-202ENST00000378839 COL23A1Q86Y22 540 aaPredicted RBP15.08■□□□□ 0
CCDC3-202ENST00000378839 CGNQ9P2M7 1197 aaKnown RBP15.08■□□□□ 0
CCDC3-202ENST00000378839 OR52Z1P0C646 297 aa15.07■□□□□ 0
CCDC3-202ENST00000378839 SNHG28P0DPA3 235 aa15.07■□□□□ 0
CCDC3-202ENST00000378839 GNG11P61952 73 aa15.07■□□□□ 0
CCDC3-202ENST00000378839 GPCPD1Q9NPB8 672 aa15.07■□□□□ 0
CCDC3-202ENST00000378839 TTF2Q9UNY4 1162 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms