RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TRIM14Q14142 442 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 ADSSL1Q8N142 457 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 DMGDHQ9UI17 866 aaKnown RBP20.69■□□□□ 0.9
CCDC3-201ENST00000378825 ZNF263O14978 683 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 MATR3P43243 847 aaKnown RBP eCLIP20.69■□□□□ 0.9
CCDC3-201ENST00000378825 ITPK1Q13572 414 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 CCNI2Q6ZMN8 369 aaPredicted RBP20.69■□□□□ 0.9
CCDC3-201ENST00000378825 CCDC87Q9NVE4 849 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 NIP7Q9Y221 180 aaKnown RBP eCLIP20.69■□□□□ 0.9
CCDC3-201ENST00000378825 RTL9Q8NET4 1388 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 DOCK2Q92608 1830 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 MYH10P35580 1976 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 IDEP14735 1019 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 GNAT2P19087 354 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 STAT6P42226 847 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 TMTC3Q6ZXV5 915 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 GPKOWQ92917 476 aaPredicted RBP eCLIP20.68■□□□□ 0.9
CCDC3-201ENST00000378825 TRIM47Q96LD4 638 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 CRACR2AQ9BSW2 395 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 CAPN11Q9UMQ6 739 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 BCORQ6W2J9 1755 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 CXCR5P32302 372 aa20.68■□□□□ 0.9
CCDC3-201ENST00000378825 NHEJ1Q9H9Q4 299 aaPredicted RBP20.68■□□□□ 0.9
CCDC3-201ENST00000378825 BRMS1Q9HCU9 246 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 JRKLQ9Y4A0 524 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 NHSL1Q5SYE7 1610 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 ERCC3P19447 782 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 TRIM21P19474 475 aaKnown RBP20.67■□□□□ 0.9
CCDC3-201ENST00000378825 GYG1P46976 350 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 DDB1Q16531 1140 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 ICE2Q659A1 982 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 LRRC1Q9BTT6 524 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 TMEM60Q9H2L4 133 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 DNAJC5Q9H3Z4 198 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 CAPN6Q9Y6Q1 641 aa20.67■□□□□ 0.9
CCDC3-201ENST00000378825 LOC102724428A0A0B4J2F2 783 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 MAGEB6P1A0A0J9YX57 407 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 H7C1D1 291 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 TUBBP07437 444 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 SIK1P57059 783 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 SND1Q7KZF4 910 aaKnown RBP eCLIP20.66■□□□□ 0.9
CCDC3-201ENST00000378825 RASSF8Q8NHQ8 419 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 CTCFLQ8NI51 663 aaPredicted RBP20.66■□□□□ 0.9
CCDC3-201ENST00000378825 HPS3Q969F9 1004 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 MLXIPQ9HAP2 919 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 LRWD1Q9UFC0 647 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 LIG3P49916 1009 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 RCAN1P53805 252 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 C4orf32Q8N8J7 132 aa20.66■□□□□ 0.9
CCDC3-201ENST00000378825 PDS5AQ29RF7 1337 aaKnown RBP20.66■□□□□ 0.9
CCDC3-201ENST00000378825 GOLGA6CA6NDK9 693 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 KLRC4O43908 158 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 CAMTA2O94983 1202 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 BMP15O95972 392 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 GOLGA6DP0CG33 693 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 IRAK1P51617 712 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 GTF2A1P52655 376 aaPredicted RBP20.65■□□□□ 0.9
CCDC3-201ENST00000378825 MAP9Q49MG5 647 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 MICALL1Q8N3F8 863 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 ZNF384Q8TF68 577 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 KAT2BQ92831 832 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 TTYH3Q9C0H2 523 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 GOLGA6AQ9NYA3 693 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 GOLGA6BA6NDN3 693 aa20.65■□□□□ 0.9
CCDC3-201ENST00000378825 NUTM2BA6NNL0 878 aaPredicted RBP20.65■□□□□ 0.9
CCDC3-201ENST00000378825 NUTM2EB1AL46 878 aaPredicted RBP20.65■□□□□ 0.9
CCDC3-201ENST00000378825 MARCH10Q8NA82 808 aaPredicted RBP20.65■□□□□ 0.9
CCDC3-201ENST00000378825 PCMTD1Q96MG8 357 aaPredicted RBP20.65■□□□□ 0.9
CCDC3-201ENST00000378825 DUSP9Q99956 384 aaKnown RBP20.65■□□□□ 0.9
CCDC3-201ENST00000378825 RIOK1Q9BRS2 568 aaKnown RBP20.65■□□□□ 0.9
CCDC3-201ENST00000378825 KCNQ2O43526 872 aa20.64■□□□□ 0.9
CCDC3-201ENST00000378825 KRT86O43790 486 aa20.64■□□□□ 0.9
CCDC3-201ENST00000378825 TSR1Q2NL82 804 aaKnown RBP20.64■□□□□ 0.9
CCDC3-201ENST00000378825 TYW1BQ6NUM6 668 aa20.64■□□□□ 0.9
CCDC3-201ENST00000378825 TUBGCP2Q9BSJ2 902 aa20.64■□□□□ 0.9
CCDC3-201ENST00000378825 COL4A1P02462 1669 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 USP17L12C9JPN9 530 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 USP17L21D6R901 530 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 SCG2P13521 617 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 MEA1Q16626 185 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 TTI2Q6NXR4 508 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 FAM76AQ8TAV0 307 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 DISC1Q9NRI5 854 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 MTMR7Q9Y216 660 aa20.64■□□□□ 0.89
CCDC3-201ENST00000378825 EPHB6O15197 1021 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 CYP2D6P10635 497 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 IGHMBP2P38935 993 aaKnown RBP20.63■□□□□ 0.89
CCDC3-201ENST00000378825 CHRNDQ07001 517 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 CREG2Q8IUH2 290 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 TSEN2Q8NCE0 465 aaKnown RBP20.63■□□□□ 0.89
CCDC3-201ENST00000378825 PPM1EQ8WY54 764 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 SAMM50Q9Y512 469 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 TARSL2A2RTX5 802 aaKnown RBP20.63■□□□□ 0.89
CCDC3-201ENST00000378825 PPARDQ03181 441 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 TBC1D8BQ0IIM8 1120 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 IQCA1Q86XH1 822 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 ANKRD13CQ8N6S4 541 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 AENQ8WTP8 325 aaKnown RBP20.63■□□□□ 0.89
CCDC3-201ENST00000378825 ARL8AQ96BM9 186 aa20.63■□□□□ 0.89
CCDC3-201ENST00000378825 ANKRD36CQ5JPF3 1778 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms