RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 GRAPQ13588 217 aa16.61■□□□□ 0.25
NPHP4-201ENST00000378156 GPR161Q8N6U8 529 aaKnown RBP16.61■□□□□ 0.25
NPHP4-201ENST00000378156 GRAPLQ8TC17 118 aaPredicted RBP16.61■□□□□ 0.25
NPHP4-201ENST00000378156 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.61■□□□□ 0.25
NPHP4-201ENST00000378156 DBNDD1Q9H9R9 158 aa16.61■□□□□ 0.25
NPHP4-201ENST00000378156 SWAP70Q9UH65 585 aa16.61■□□□□ 0.25
NPHP4-201ENST00000378156 CHGBP05060 677 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 TRPC3Q13507 836 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 TYW1BQ6NUM6 668 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 GPBP1Q86WP2 473 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 PPFIBP2Q8ND30 876 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 GDAP1L1Q96MZ0 367 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 NRXN1Q9ULB1 1477 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 GTPBP6O43824 516 aaPredicted RBP16.6■□□□□ 0.25
NPHP4-201ENST00000378156 C8orf74Q6P047 294 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 CFAP57Q96MR6 1250 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 SELENOSQ9BQE4 189 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 GOLPH3LQ9H4A5 285 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 SPOPO43791 374 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 MIER3Q7Z3K6 550 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 PAIP2Q9BPZ3 127 aaKnown RBP16.6■□□□□ 0.25
NPHP4-201ENST00000378156 NLRC4Q9NPP4 1024 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 GNPTABQ3T906 1256 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 UTP14CQ5TAP6 766 aaKnown RBP16.6■□□□□ 0.25
NPHP4-201ENST00000378156 CC2D2BQ6DHV5 1058 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 SMCR8Q8TEV9 937 aaPredicted RBP16.6■□□□□ 0.25
NPHP4-201ENST00000378156 CSRNP1Q96S65 589 aa16.6■□□□□ 0.25
NPHP4-201ENST00000378156 TNS3Q68CZ2 1445 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 RPAP1Q9BWH6 1393 aaPredicted RBP16.59■□□□□ 0.25
NPHP4-201ENST00000378156 CYP2D7A0A087X1C5 515 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 RPN1P04843 607 aaKnown RBP16.59■□□□□ 0.25
NPHP4-201ENST00000378156 MAP3K9P80192 1104 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 RRAGAQ7L523 313 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 SLFN12Q8IYM2 578 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 MYOCDQ8IZQ8 938 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 AMNQ9BXJ7 453 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 KCNG1Q9UIX4 513 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 MAN1B1Q9UKM7 699 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 PCDHB6Q9Y5E3 794 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 ADGRB1O14514 1584 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 TESPA1A2RU30 521 aaPredicted RBP16.59■□□□□ 0.25
NPHP4-201ENST00000378156 FOSP01100 380 aaPredicted RBP16.59■□□□□ 0.25
NPHP4-201ENST00000378156 LONP1P36776 959 aaKnown RBP16.59■□□□□ 0.25
NPHP4-201ENST00000378156 TRAPPC10P48553 1259 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 DIXDC1Q155Q3 683 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 ASPRV1Q53RT3 343 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 RASGRP4Q8TDF6 673 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 EFCAB8A8MWE9 144 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 CASP14P31944 242 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 STRBPQ96SI9 672 aaKnown RBP16.59■□□□□ 0.25
NPHP4-201ENST00000378156 DDX25Q9UHL0 483 aaKnown RBP16.59■□□□□ 0.25
NPHP4-201ENST00000378156 OVOS2A0A0J9YW53 1432 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 OVOS2Q6IE36 1432 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 LIFRP42702 1097 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 KLHL30Q0D2K2 578 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 NOX5Q96PH1 765 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.59■□□□□ 0.25
NPHP4-201ENST00000378156 PCDHB13Q9Y5F0 798 aa16.59■□□□□ 0.25
NPHP4-201ENST00000378156 CLRN2A0PK11 232 aa16.58■□□□□ 0.25
NPHP4-201ENST00000378156 TTLL1O95922 423 aa16.58■□□□□ 0.25
NPHP4-201ENST00000378156 TBC1D10CQ8IV04 446 aa16.58■□□□□ 0.25
NPHP4-201ENST00000378156 GSDMAQ96QA5 445 aa16.58■□□□□ 0.25
NPHP4-201ENST00000378156 COMMD10Q9Y6G5 202 aa16.58■□□□□ 0.25
NPHP4-201ENST00000378156 SOS2Q07890 1332 aaPredicted RBP16.58■□□□□ 0.25
NPHP4-201ENST00000378156 NAA25Q14CX7 972 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 SEL1L2Q5TEA6 688 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 DPY19L2Q6NUT2 758 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 OTUD6AQ7L8S5 288 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 IWS1Q96ST2 819 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 IFIH1Q9BYX4 1025 aaKnown RBP16.58■□□□□ 0.24
NPHP4-201ENST00000378156 SAMSN1Q9NSI8 373 aaKnown RBP16.58■□□□□ 0.24
NPHP4-201ENST00000378156 NARFQ9UHQ1 456 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 PNMA2Q9UL42 364 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 NDUFAB1O14561 156 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 INPP5BP32019 993 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 DNM2P50570 870 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 CALCOCO2Q13137 446 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 CDAN1Q8IWY9 1227 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 KANSL2Q9H9L4 492 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 SAR1BQ9Y6B6 198 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 KIAA1210Q9ULL0 1709 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 TLDC2A0PJX2 215 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 CCDC160A6NGH7 325 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 ERCC5P28715 1186 aaPredicted RBP16.58■□□□□ 0.24
NPHP4-201ENST00000378156 CDC25AP30304 524 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 DDIT3P35638 169 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 MECOMQ03112 1051 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 ZNF354CQ86Y25 554 aa16.58■□□□□ 0.24
NPHP4-201ENST00000378156 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.58■□□□□ 0.24
NPHP4-201ENST00000378156 CPSF2Q9P2I0 782 aaKnown RBP16.58■□□□□ 0.24
NPHP4-201ENST00000378156 MKRN1Q9UHC7 482 aaKnown RBP16.58■□□□□ 0.24
NPHP4-201ENST00000378156 FLOT1O75955 427 aa16.57■□□□□ 0.24
NPHP4-201ENST00000378156 GNA14O95837 355 aa16.57■□□□□ 0.24
NPHP4-201ENST00000378156 USP17L8P0C7I0 530 aa16.57■□□□□ 0.24
NPHP4-201ENST00000378156 ARHGEF16Q5VV41 709 aa16.57■□□□□ 0.24
NPHP4-201ENST00000378156 ARHGAP27Q6ZUM4 889 aa16.57■□□□□ 0.24
NPHP4-201ENST00000378156 STOX1Q6ZVD7 989 aa16.57■□□□□ 0.24
NPHP4-201ENST00000378156 MCF2L2Q86YR7 1114 aa16.57■□□□□ 0.24
NPHP4-201ENST00000378156 GLG1Q92896 1179 aa16.57■□□□□ 0.24
NPHP4-201ENST00000378156 LRRC45Q96CN5 670 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms