RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 TRIM47Q96LD4 638 aa23.66■■□□□ 1.38
UPF3A-202ENST00000375299 PURBQ96QR8 312 aaKnown RBP23.66■■□□□ 1.38
UPF3A-202ENST00000375299 SLIT2O94813 1529 aa23.66■■□□□ 1.38
UPF3A-202ENST00000375299 ZNF185O15231 689 aa23.66■■□□□ 1.38
UPF3A-202ENST00000375299 IPO7O95373 1038 aaKnown RBP23.66■■□□□ 1.38
UPF3A-202ENST00000375299 SCG2P13521 617 aa23.66■■□□□ 1.38
UPF3A-202ENST00000375299 KCNB1Q14721 858 aa23.66■■□□□ 1.38
UPF3A-202ENST00000375299 CCDC170Q8IYT3 715 aa23.66■■□□□ 1.38
UPF3A-202ENST00000375299 NHEJ1Q9H9Q4 299 aaPredicted RBP23.66■■□□□ 1.38
UPF3A-202ENST00000375299 DISC1Q9NRI5 854 aa23.66■■□□□ 1.38
UPF3A-202ENST00000375299 ZNHIT6Q9NWK9 470 aaKnown RBP23.66■■□□□ 1.38
UPF3A-202ENST00000375299 CICQ96RK0 1608 aaPredicted RBP23.66■■□□□ 1.38
UPF3A-202ENST00000375299 CPP00450 1065 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 IDEP14735 1019 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 C2orf54Q08AI8 447 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 NUP58Q9BVL2 599 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 KAT6BQ8WYB5 2073 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 B4DLN1 442 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 EIF5P55010 431 aaKnown RBP23.65■■□□□ 1.38
UPF3A-202ENST00000375299 C4orf32Q8N8J7 132 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 AENQ8WTP8 325 aaKnown RBP23.65■■□□□ 1.38
UPF3A-202ENST00000375299 NOC3LQ8WTT2 800 aaKnown RBP23.65■■□□□ 1.38
UPF3A-202ENST00000375299 AGPAT5Q9NUQ2 364 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 EXOC1Q9NV70 894 aa23.65■■□□□ 1.38
UPF3A-202ENST00000375299 CYP2D7A0A087X1C5 515 aa23.64■■□□□ 1.38
UPF3A-202ENST00000375299 GOLGA6CA6NDK9 693 aa23.64■■□□□ 1.38
UPF3A-202ENST00000375299 GOLGA6BA6NDN3 693 aa23.64■■□□□ 1.38
UPF3A-202ENST00000375299 PSMA7O14818 248 aa23.64■■□□□ 1.38
UPF3A-202ENST00000375299 GOLGA6DP0CG33 693 aa23.64■■□□□ 1.38
UPF3A-202ENST00000375299 CCDC70Q6NSX1 233 aa23.64■■□□□ 1.38
UPF3A-202ENST00000375299 GOLGA6AQ9NYA3 693 aa23.64■■□□□ 1.38
UPF3A-202ENST00000375299 FAM184BQ9ULE4 1060 aa23.64■■□□□ 1.38
UPF3A-202ENST00000375299 TRIM21P19474 475 aaKnown RBP23.64■■□□□ 1.37
UPF3A-202ENST00000375299 PDE4CQ08493 712 aa23.64■■□□□ 1.37
UPF3A-202ENST00000375299 RETREG2Q8NC44 543 aa23.64■■□□□ 1.37
UPF3A-202ENST00000375299 RIOK1Q9BRS2 568 aaKnown RBP23.64■■□□□ 1.37
UPF3A-202ENST00000375299 FAM107BQ9H098 131 aa23.64■■□□□ 1.37
UPF3A-202ENST00000375299 JADE2Q9NQC1 790 aa23.64■■□□□ 1.37
UPF3A-202ENST00000375299 ADAMTS3O15072 1205 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 KLRC4O43908 158 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 FGRP09769 529 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 PCP11498 1178 aaKnown RBP23.63■■□□□ 1.37
UPF3A-202ENST00000375299 PFKFB3Q16875 520 aaPredicted RBP23.63■■□□□ 1.37
UPF3A-202ENST00000375299 NAALADL2Q58DX5 795 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 TTI2Q6NXR4 508 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 AMOTL1Q8IY63 956 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 FNBP4Q8N3X1 1017 aaPredicted RBP23.63■■□□□ 1.37
UPF3A-202ENST00000375299 KAT14Q9H8E8 782 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 RREB1Q92766 1687 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 A0A087WUV0 522 aaPredicted RBP23.63■■□□□ 1.37
UPF3A-202ENST00000375299 ZBED6P86452 979 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 TADA2BQ86TJ2 420 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 SECISBP2LQ93073 1101 aaKnown RBP23.63■■□□□ 1.37
UPF3A-202ENST00000375299 TUBGCP2Q9BSJ2 902 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 ABCF2Q9UG63 623 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 JRKLQ9Y4A0 524 aa23.63■■□□□ 1.37
UPF3A-202ENST00000375299 CACNA1SQ13698 1873 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 RASSF10A6NK89 507 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 VAV2P52735 878 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 MMGT1Q8N4V1 131 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 GIMAP8Q8ND71 665 aaPredicted RBP23.62■■□□□ 1.37
UPF3A-202ENST00000375299 BRIP1Q9BX63 1249 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 TSGA10Q9BZW7 698 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 BAZ2BQ9UIF8 2168 aaKnown RBP23.62■■□□□ 1.37
UPF3A-202ENST00000375299 MACROD2A1Z1Q3 448 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 RHOBTB3O94955 611 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 MYL1P05976 194 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 GTF2A1P52655 376 aaPredicted RBP23.62■■□□□ 1.37
UPF3A-202ENST00000375299 KIF5AQ12840 1032 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 SUSD4Q5VX71 490 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 RUBCNQ92622 972 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 DUSP10Q9Y6W6 482 aa23.62■■□□□ 1.37
UPF3A-202ENST00000375299 PPFIA1Q13136 1202 aa23.61■■□□□ 1.37
UPF3A-202ENST00000375299 EXOC5O00471 708 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 KLK7P49862 253 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 IRAK1P51617 712 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 SEMA3FQ13275 785 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.6■■□□□ 1.37
UPF3A-202ENST00000375299 SNX12Q9UMY4 172 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 A0A1B0GUL6 1792 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 CDK17Q00537 523 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 TBC1D8BQ0IIM8 1120 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 CREG2Q8IUH2 290 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 CSGALNACT2Q8N6G5 542 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 RASSF8Q8NHQ8 419 aa23.6■■□□□ 1.37
UPF3A-202ENST00000375299 DUSP9Q99956 384 aaKnown RBP23.6■■□□□ 1.37
UPF3A-202ENST00000375299 VEGFAP15692 232 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-202ENST00000375299 CALML3P27482 149 aa23.59■■□□□ 1.37
UPF3A-202ENST00000375299 IGHMBP2P38935 993 aaKnown RBP23.59■■□□□ 1.37
UPF3A-202ENST00000375299 DYNLL1P63167 89 aaKnown RBP23.59■■□□□ 1.37
UPF3A-202ENST00000375299 CYP27A1Q02318 531 aa23.59■■□□□ 1.37
UPF3A-202ENST00000375299 SND1Q7KZF4 910 aaKnown RBP eCLIP23.59■■□□□ 1.37
UPF3A-202ENST00000375299 ZNF572Q7Z3I7 529 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-202ENST00000375299 DHTKD1Q96HY7 919 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-202ENST00000375299 NUTM2BA6NNL0 878 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-202ENST00000375299 NUTM2EB1AL46 878 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-202ENST00000375299 ITIH3Q06033 890 aa23.59■■□□□ 1.37
UPF3A-202ENST00000375299 SKIDA1Q1XH10 827 aa23.59■■□□□ 1.37
UPF3A-202ENST00000375299 DTHD1Q6ZMT9 781 aa23.59■■□□□ 1.37
UPF3A-202ENST00000375299 BLIDQ8IZY5 108 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms