RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 ABCC4O15439 1325 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 PHKG2P15735 406 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 SYMPKQ92797 1274 aaKnown RBP24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 RIC8AQ9NPQ8 531 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 BCS1LQ9Y276 419 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 KIF24Q5T7B8 1368 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 NDUFA8P51970 172 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 RNF40O75150 1001 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 CCDC127Q96BQ5 260 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 CD2APQ9Y5K6 639 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 MED23Q9ULK4 1368 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 HADHQ16836 314 aaKnown RBP24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 PLA2G4DQ86XP0 818 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 PPM1KQ8N3J5 372 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 UHMK1Q8TAS1 419 aaKnown RBP24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 PCDHA7Q9UN72 937 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 MTMR6Q9Y217 621 aa24.32■■□□□ 1.48
TM9SF3-201ENST00000371142 ICA1Q05084 483 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 NXNQ6DKJ4 435 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 ARMCX5Q6P1M9 558 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 IL17REQ8NFR9 667 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 SHANK2Q9UPX8 1470 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 NPC1L1Q9UHC9 1359 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 TROVE2P10155 538 aaKnown RBP eCLIP24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 SH2D4BQ5SQS7 431 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 GRK7Q8WTQ7 553 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 ANKFY1Q9P2R3 1169 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 ATP2B4P23634 1241 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 ADAM9Q13443 819 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 KAZNQ674X7 775 aa24.31■■□□□ 1.48
TM9SF3-201ENST00000371142 CMA1P23946 247 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 PHBP35232 272 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 HINFPQ9BQA5 517 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 TNFAIP1Q13829 316 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 NCAPG2Q86XI2 1143 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 GTPBP6O43824 516 aaPredicted RBP24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 GNGT1P63211 74 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 CYP4A11Q02928 519 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 RPS6KA2Q15349 733 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 RPGRIP1Q96KN7 1286 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 SPDYE16A6NNV3 312 aaPredicted RBP24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 IGBP1P78318 339 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 SPDYE2Q495Y8 402 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 BAIAP2L1Q9UHR4 511 aa24.3■■□□□ 1.48
TM9SF3-201ENST00000371142 PPP4R1Q8TF05 950 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 TSC1Q92574 1164 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 FAM114A2Q9NRY5 505 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 TMEM232C9JQI7 657 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 PPFIA4O75335 1185 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 ATP1A2P50993 1020 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 PTGDRQ13258 359 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 ANKRD35Q8N283 1001 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 SYNJ2BP-COX16A0A087WUM0 186 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 N4BP1O75113 896 aaKnown RBP24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 DDAH1O94760 285 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 DMP1Q13316 513 aaPredicted RBP24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 GOLGA5Q8TBA6 731 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 COX16Q9P0S2 106 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 PZPP20742 1482 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 PKP1Q13835 747 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 EEF2KMTQ96G04 330 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 SSH2Q76I76 1423 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 RNF10Q8N5U6 811 aaKnown RBP24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 SPC25Q9HBM1 224 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 WDR62O43379 1518 aa24.29■■□□□ 1.48
TM9SF3-201ENST00000371142 SCRN1Q12765 414 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 BCL2L12Q9HB09 334 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 OATP04181 439 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 RFX1P22670 979 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 LRRIQ4A6NIV6 560 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 CNGA1P29973 690 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 DIXDC1Q155Q3 683 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 GREM2Q9H772 168 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 SAT1P21673 171 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 POLGP54098 1239 aaPredicted RBP24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 GABPB1Q06547 395 aaPredicted RBP24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 PHLDB2Q86SQ0 1253 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 SCYL1Q96KG9 808 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 SLFN13Q68D06 897 aa24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 TACO1Q9BSH4 297 aaKnown RBP24.28■■□□□ 1.48
TM9SF3-201ENST00000371142 ARHGAP42A6NI28 874 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 PIK3CAP42336 1068 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 BRD3Q15059 726 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 ADPGKQ9BRR6 497 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 SLAIN2Q9P270 581 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 THAP12O43422 761 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 PDIA3P30101 505 aaKnown RBP24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 ADORA1P30542 326 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 MCF2L2Q86YR7 1114 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 GJA10Q969M2 543 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 BEGAINQ9BUH8 593 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 COL4A3BPQ9Y5P4 624 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 TMEM191BP0C7N4 346 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 NAA35Q5VZE5 725 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 NME8Q8N427 588 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 SLC5A4Q9NY91 659 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 PRPF31Q8WWY3 499 aaKnown RBP24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 CCPG1Q9ULG6 757 aa24.27■■□□□ 1.48
TM9SF3-201ENST00000371142 KIF3CO14782 793 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms