RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 FAM126BQ8IXS8 530 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 IL27Q8NEV9 243 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 HAUS7Q99871 368 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 RIPK3Q9Y572 518 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 CHD9Q3L8U1 2897 aa16.58■□□□□ 0.25
VPS29-201ENST00000360579 GRXCR1A8MXD5 290 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 NDUFB10O96000 172 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 CPXCR1Q8N123 301 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 CHST13Q8NET6 341 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 HERVK_113Q902F9 699 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 NUP88Q99567 741 aaPredicted RBP16.58■□□□□ 0.24
VPS29-201ENST00000360579 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.58■□□□□ 0.24
VPS29-201ENST00000360579 SEZ6LQ9BYH1 1024 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 PPP1R12CQ9BZL4 782 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 MKNK2Q9HBH9 465 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 IL23AQ9NPF7 189 aa16.58■□□□□ 0.24
VPS29-201ENST00000360579 CABYRO75952 493 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 ACRP10323 421 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 MS4A1P11836 297 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 SLC4A3P48751 1232 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 OAZ1P54368 228 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 NKX3-2P78367 333 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 SLFNL1Q499Z3 407 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 ARMCX2Q7L311 632 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 ADAMTS19Q8TE59 1207 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 TSPYL2Q9H2G4 693 aaPredicted RBP16.57■□□□□ 0.24
VPS29-201ENST00000360579 SLC28A3Q9HAS3 691 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 SLC38A10Q9HBR0 1119 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 SYNPO2Q9UMS6 1093 aa16.57■□□□□ 0.24
VPS29-201ENST00000360579 FDX1P10109 184 aa16.56■□□□□ 0.24
VPS29-201ENST00000360579 IGFBP4P22692 258 aa16.56■□□□□ 0.24
VPS29-201ENST00000360579 SBK1Q52WX2 424 aa16.56■□□□□ 0.24
VPS29-201ENST00000360579 GIMAP6Q6P9H5 292 aa16.56■□□□□ 0.24
VPS29-201ENST00000360579 KIFC2Q96AC6 838 aa16.56■□□□□ 0.24
VPS29-201ENST00000360579 UHRF1Q96T88 793 aaPredicted RBP16.56■□□□□ 0.24
VPS29-201ENST00000360579 BCL11AQ9H165 835 aa16.56■□□□□ 0.24
VPS29-201ENST00000360579 ZNF287Q9HBT7 754 aa16.56■□□□□ 0.24
VPS29-201ENST00000360579 FEM1BQ9UK73 627 aa16.56■□□□□ 0.24
VPS29-201ENST00000360579 BAZ2AQ9UIF9 1905 aaKnown RBP16.56■□□□□ 0.24
VPS29-201ENST00000360579 BDP1A6H8Y1 2624 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 ADCY6O43306 1168 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 CD4P01730 458 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 FGBP02675 491 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 RASA1P20936 1047 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 CYP2C18P33260 490 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 PANK1Q8TE04 598 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 PUS7LQ9H0K6 701 aaKnown RBP16.55■□□□□ 0.24
VPS29-201ENST00000360579 HIPK3Q9H422 1215 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 RAVER2Q9HCJ3 691 aaKnown RBP16.55■□□□□ 0.24
VPS29-201ENST00000360579 CLIP2Q9UDT6 1046 aa16.55■□□□□ 0.24
VPS29-201ENST00000360579 IRX5P78411 483 aaPredicted RBP16.54■□□□□ 0.24
VPS29-201ENST00000360579 TNFAIP2Q03169 654 aa16.54■□□□□ 0.24
VPS29-201ENST00000360579 ADGRE1Q14246 886 aa16.54■□□□□ 0.24
VPS29-201ENST00000360579 CCDC85BQ15834 202 aaPredicted RBP16.54■□□□□ 0.24
VPS29-201ENST00000360579 NOL8Q76FK4 1167 aaKnown RBP16.54■□□□□ 0.24
VPS29-201ENST00000360579 CCDC144CPQ8IYA2 1237 aa16.54■□□□□ 0.24
VPS29-201ENST00000360579 SLC43A3Q8NBI5 491 aa16.54■□□□□ 0.24
VPS29-201ENST00000360579 MKL1Q969V6 931 aa16.54■□□□□ 0.24
VPS29-201ENST00000360579 FGD4Q96M96 766 aa16.54■□□□□ 0.24
VPS29-201ENST00000360579 NCOR1O75376 2440 aa16.54■□□□□ 0.24
VPS29-201ENST00000360579 ASB14A6NK59 587 aa16.53■□□□□ 0.24
VPS29-201ENST00000360579 CTAGE5O15320 804 aa16.53■□□□□ 0.24
VPS29-201ENST00000360579 ZEB2O60315 1214 aa16.53■□□□□ 0.24
VPS29-201ENST00000360579 RPUSD2Q8IZ73 545 aaKnown RBP16.53■□□□□ 0.24
VPS29-201ENST00000360579 GMCL1P1Q8NEA9 526 aa16.53■□□□□ 0.24
VPS29-201ENST00000360579 STRBPQ96SI9 672 aaKnown RBP16.53■□□□□ 0.24
VPS29-201ENST00000360579 KATNBL1Q9H079 304 aa16.53■□□□□ 0.24
VPS29-201ENST00000360579 NKX2-4Q9H2Z4 354 aa16.53■□□□□ 0.24
VPS29-201ENST00000360579 ACAD9Q9H845 621 aa16.53■□□□□ 0.24
VPS29-201ENST00000360579 CXXC1Q9P0U4 656 aaPredicted RBP16.53■□□□□ 0.24
VPS29-201ENST00000360579 XIRP2A4UGR9 3374 aa16.53■□□□□ 0.24
VPS29-201ENST00000360579 IGKV6D-41A0A0C4DH26 115 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 MINDY4BA8MYZ0 360 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 TTLL1O95922 423 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 CHGBP05060 677 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 ITGA7Q13683 1181 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 CXCL17Q6UXB2 119 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 ZNF444Q8N0Y2 327 aaPredicted RBP16.52■□□□□ 0.24
VPS29-201ENST00000360579 PIP4P2Q8N4L2 257 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 AP5M1Q9H0R1 490 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 CHMP4BQ9H444 224 aaKnown RBP16.52■□□□□ 0.24
VPS29-201ENST00000360579 DDX19BQ9UMR2 479 aa16.52■□□□□ 0.24
VPS29-201ENST00000360579 GREB1LQ9C091 1923 aaPredicted RBP16.52■□□□□ 0.23
VPS29-201ENST00000360579 CHD7Q9P2D1 2997 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 GSG1L2A8MUP6 293 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 BMP3P12645 472 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 BEX3Q00994 111 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 FSCN1Q16658 493 aaKnown RBP16.51■□□□□ 0.23
VPS29-201ENST00000360579 AAK1Q2M2I8 961 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 OTOP2Q7RTS6 562 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 TLK2Q86UE8 772 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 SIRT2Q8IXJ6 389 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 FAM133AQ8N9E0 248 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 HOMER2Q9NSB8 354 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 MTMR4Q9NYA4 1195 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 GNEQ9Y223 722 aaKnown RBP16.51■□□□□ 0.23
VPS29-201ENST00000360579 COG6Q9Y2V7 657 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 SLC4A7Q9Y6M7 1214 aa16.51■□□□□ 0.23
VPS29-201ENST00000360579 GNAT2P19087 354 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 PLA2G5P39877 138 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms