RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 GJA10Q969M2 543 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 KIAA1024Q9UPX6 916 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 MLH3Q9UHC1 1453 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 ESYT2A0FGR8 921 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 MMP10P09238 476 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 CCDC93Q567U6 631 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 GKAP1Q5VSY0 366 aaPredicted RBP17.14■□□□□ 0.33
PTPRF-201ENST00000359947 RSRC2Q7L4I2 434 aaKnown RBP17.14■□□□□ 0.33
PTPRF-201ENST00000359947 PARD3BQ8TEW8 1205 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 CEP85LQ5SZL2 805 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 OR52Z1P0C646 297 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 STAT1P42224 750 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 ZNF131P52739 623 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 SRGAP1Q7Z6B7 1085 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 RASGRP4Q8TDF6 673 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 CBX8Q9HC52 389 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.13■□□□□ 0.33
PTPRF-201ENST00000359947 RPS6KA1Q15418 735 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 LONRF2Q1L5Z9 754 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 MGARPQ8TDB4 240 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 ZBED2Q9BTP6 218 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 AOX1Q06278 1338 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 KDM2BQ8NHM5 1336 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 ADKP55263 362 aaKnown RBP17.13■□□□□ 0.33
PTPRF-201ENST00000359947 POLIQ9UNA4 740 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 LEMD3Q9Y2U8 911 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 RPUSD2Q8IZ73 545 aaKnown RBP17.13■□□□□ 0.33
PTPRF-201ENST00000359947 IREB2P48200 963 aaKnown RBP17.13■□□□□ 0.33
PTPRF-201ENST00000359947 DCLK2Q8N568 766 aa17.13■□□□□ 0.33
PTPRF-201ENST00000359947 ZNF335Q9H4Z2 1342 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-201ENST00000359947 HNRNPDLO14979 420 aaKnown RBP17.12■□□□□ 0.33
PTPRF-201ENST00000359947 CIB2O75838 187 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 TTLL1O95922 423 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 XPAP23025 273 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-201ENST00000359947 KRT26Q7Z3Y9 468 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 RAB20Q9NX57 234 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 ZBTB33Q86T24 672 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 RABGAP1Q9Y3P9 1069 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 NKX1-1Q15270 411 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-201ENST00000359947 HHATQ5VTY9 493 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 PDE6CP51160 858 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 CEP128Q6ZU80 1094 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 NOC2LQ9Y3T9 749 aaKnown RBP17.12■□□□□ 0.33
PTPRF-201ENST00000359947 NOSTRINQ8IVI9 506 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 CLIC6Q96NY7 704 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 IFIH1Q9BYX4 1025 aaKnown RBP17.12■□□□□ 0.33
PTPRF-201ENST00000359947 IRAK4Q9NWZ3 460 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 FNDC3AQ9Y2H6 1198 aaKnown RBP17.12■□□□□ 0.33
PTPRF-201ENST00000359947 YEATS2Q9ULM3 1422 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 PLEKHG3A1L390 1219 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 ODR4Q5SWX8 454 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 PALM2Q8IXS6 379 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 ZKSCAN5Q9Y2L8 839 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 MAPKBP1O60336 1514 aa17.12■□□□□ 0.33
PTPRF-201ENST00000359947 IVLP07476 585 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 USP14P54578 494 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 CACNB1Q02641 598 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-201ENST00000359947 TMCO4Q5TGY1 634 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 SYCE1Q8N0S2 351 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 PI4K2BQ8TCG2 481 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 BUB1O43683 1085 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 CC2D2BQ6DHV5 1058 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 STMN2Q93045 179 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 ZNF653Q96CK0 615 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 TFDP1Q14186 410 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 RETREG2Q8NC44 543 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 AMNQ9BXJ7 453 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 NOL3O60936 208 aaKnown RBP17.11■□□□□ 0.33
PTPRF-201ENST00000359947 STAT2P52630 851 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 UNC5CLQ8IV45 518 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 ERCC6LQ2NKX8 1250 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 CIAPIN1Q6FI81 312 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 HDXQ7Z353 690 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 TTLL6Q8N841 843 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 SEMA3EO15041 775 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 GNA14O95837 355 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 PPP2R5AQ15172 486 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 ZNF827Q17R98 1081 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 KRT12Q99456 494 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 RBSNQ9H1K0 784 aa17.11■□□□□ 0.33
PTPRF-201ENST00000359947 CACNB3P54284 484 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 MIS18BP1Q6P0N0 1132 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 C7orf31Q8N865 590 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 ZMYM6O95789 1325 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 MEIS1O00470 390 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 IFT20Q8IY31 132 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 TTC30BQ8N4P2 665 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 ZNF277Q9NRM2 450 aaPredicted RBP17.1■□□□□ 0.33
PTPRF-201ENST00000359947 ADD3Q9UEY8 706 aaKnown RBP17.1■□□□□ 0.33
PTPRF-201ENST00000359947 PCDHB4Q9Y5E5 795 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 USP17L3A6NCW0 530 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 USP17L4A6NCW7 530 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 KCNJ18B7U540 433 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 MYL3P08590 195 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 IL6STP40189 918 aaPredicted RBP17.1■□□□□ 0.33
PTPRF-201ENST00000359947 KCNJ12Q14500 433 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 USP17L1Q7RTZ2 530 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 BTBD18B2RXH4 712 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 BNIP3LO60238 219 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 ARMCX3Q9UH62 379 aaPredicted RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms