RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 SPP2Q13103 211 aa21.4■■□□□ 1.02
CLN3-204ENST00000357857 MTMR2Q13614 643 aa21.4■■□□□ 1.02
CLN3-204ENST00000357857 NOM1Q5C9Z4 860 aaKnown RBP21.4■■□□□ 1.02
CLN3-204ENST00000357857 CAVIN1Q6NZI2 390 aaKnown RBP21.4■■□□□ 1.02
CLN3-204ENST00000357857 PIK3AP1Q6ZUJ8 805 aa21.4■■□□□ 1.02
CLN3-204ENST00000357857 RASGRP4Q8TDF6 673 aa21.4■■□□□ 1.02
CLN3-204ENST00000357857 ADCY7P51828 1080 aa21.39■■□□□ 1.01
CLN3-204ENST00000357857 PTPAQ15257 358 aa21.39■■□□□ 1.01
CLN3-204ENST00000357857 ZHX2Q9Y6X8 837 aa21.39■■□□□ 1.01
CLN3-204ENST00000357857 CCDC194A0A1B0GVG4 234 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 ATP2B1P20020 1258 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 IREB2P48200 963 aaKnown RBP21.38■■□□□ 1.01
CLN3-204ENST00000357857 TRAPPC10P48553 1259 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 BACE1P56817 501 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 SNAP25P60880 206 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.38■■□□□ 1.01
CLN3-204ENST00000357857 AMNQ9BXJ7 453 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 CLEC11AQ9Y240 323 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 PCDHB6Q9Y5E3 794 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 TRIM75PA6NK02 468 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 VGLL4Q14135 290 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 FBXO11Q86XK2 927 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 JMYQ8N9B5 988 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 KIFC2Q96AC6 838 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 EMILIN3Q9NT22 766 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 PCDHA7Q9UN72 937 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 CEP131Q9UPN4 1083 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 PCDHA1Q9Y5I3 950 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 CSADQ9Y600 493 aa21.38■■□□□ 1.01
CLN3-204ENST00000357857 PPP6R2O75170 966 aa21.37■■□□□ 1.01
CLN3-204ENST00000357857 KRT25Q7Z3Z0 450 aa21.37■■□□□ 1.01
CLN3-204ENST00000357857 REXO1Q8N1G1 1221 aaKnown RBP21.37■■□□□ 1.01
CLN3-204ENST00000357857 RIC8AQ9NPQ8 531 aa21.37■■□□□ 1.01
CLN3-204ENST00000357857 SNCAIPQ9Y6H5 919 aa21.37■■□□□ 1.01
CLN3-204ENST00000357857 PARP14Q460N5 1801 aa21.36■■□□□ 1.01
CLN3-204ENST00000357857 DGKZQ13574 1117 aa21.36■■□□□ 1.01
CLN3-204ENST00000357857 TTC38Q5R3I4 469 aa21.36■■□□□ 1.01
CLN3-204ENST00000357857 CUL5Q93034 780 aa21.36■■□□□ 1.01
CLN3-204ENST00000357857 SYAP1Q96A49 352 aaPredicted RBP21.36■■□□□ 1.01
CLN3-204ENST00000357857 RANBP17Q9H2T7 1088 aaKnown RBP21.36■■□□□ 1.01
CLN3-204ENST00000357857 FBXO28Q9NVF7 368 aa21.36■■□□□ 1.01
CLN3-204ENST00000357857 TMEM63CQ9P1W3 806 aa21.36■■□□□ 1.01
CLN3-204ENST00000357857 PTPRFP10586 1907 aa21.36■■□□□ 1.01
CLN3-204ENST00000357857 C19orf81C9J6K1 198 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 VCAM1P19320 739 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 MARCKSP29966 332 aaPredicted RBP21.35■■□□□ 1.01
CLN3-204ENST00000357857 ADALQ6DHV7 355 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 GLT8D2Q9H1C3 349 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.35■■□□□ 1.01
CLN3-204ENST00000357857 SMCHD1A6NHR9 2005 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 BMP15O95972 392 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 POTEIP0CG38 1075 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 POTEJP0CG39 1038 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 MRPL12P52815 198 aaKnown RBP21.35■■□□□ 1.01
CLN3-204ENST00000357857 TRAF1Q13077 416 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 TTLL12Q14166 644 aaPredicted RBP21.35■■□□□ 1.01
CLN3-204ENST00000357857 C12orf42Q96LP6 360 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 SLF1Q9BQI6 1058 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 PSTPIP2Q9H939 334 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 RRAGCQ9HB90 399 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 BIN2Q9UBW5 565 aaPredicted RBP21.35■■□□□ 1.01
CLN3-204ENST00000357857 AFG3L2Q9Y4W6 797 aa21.35■■□□□ 1.01
CLN3-204ENST00000357857 A0A1W2PQ27 194 aa21.34■■□□□ 1.01
CLN3-204ENST00000357857 A0A1W2PQ64 194 aa21.34■■□□□ 1.01
CLN3-204ENST00000357857 A0A1W2PQD8 194 aa21.34■■□□□ 1.01
CLN3-204ENST00000357857 LIG1P18858 919 aa21.34■■□□□ 1.01
CLN3-204ENST00000357857 NONOQ15233 471 aaKnown RBP eCLIP21.34■■□□□ 1.01
CLN3-204ENST00000357857 USH1GQ495M9 461 aa21.34■■□□□ 1.01
CLN3-204ENST00000357857 JAKMIP3Q5VZ66 844 aa21.34■■□□□ 1.01
CLN3-204ENST00000357857 SAMD1Q6SPF0 538 aaPredicted RBP21.34■■□□□ 1.01
CLN3-204ENST00000357857 CCAR1Q8IX12 1150 aaKnown RBP21.34■■□□□ 1.01
CLN3-204ENST00000357857 TANGO6Q9C0B7 1094 aa21.34■■□□□ 1.01
CLN3-204ENST00000357857 RPAP3Q9H6T3 665 aaPredicted RBP21.34■■□□□ 1.01
CLN3-204ENST00000357857 WNT7AO00755 349 aa21.33■■□□□ 1.01
CLN3-204ENST00000357857 HMGCS2P54868 508 aa21.33■■□□□ 1.01
CLN3-204ENST00000357857 ZNF174Q15697 407 aa21.33■■□□□ 1.01
CLN3-204ENST00000357857 MAP3K11Q16584 847 aa21.33■■□□□ 1.01
CLN3-204ENST00000357857 ANKRD13AQ8IZ07 590 aa21.33■■□□□ 1.01
CLN3-204ENST00000357857 PRPF38AQ8NAV1 312 aaKnown RBP21.33■■□□□ 1.01
CLN3-204ENST00000357857 TMEM260Q9NX78 707 aa21.33■■□□□ 1.01
CLN3-204ENST00000357857 MORC2Q9Y6X9 1032 aaPredicted RBP21.33■■□□□ 1.01
CLN3-204ENST00000357857 INF2Q27J81 1249 aa21.32■■□□□ 1
CLN3-204ENST00000357857 AXDND1Q5T1B0 1012 aaPredicted RBP21.32■■□□□ 1
CLN3-204ENST00000357857 CCDC174Q6PII3 467 aa21.32■■□□□ 1
CLN3-204ENST00000357857 TMOD4Q9NZQ9 345 aa21.32■■□□□ 1
CLN3-204ENST00000357857 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.32■■□□□ 1
CLN3-204ENST00000357857 CLK2P49760 499 aaKnown RBP21.32■■□□□ 1
CLN3-204ENST00000357857 UBE2SQ16763 222 aa21.32■■□□□ 1
CLN3-204ENST00000357857 MAP1SQ66K74 1059 aaPredicted RBP21.32■■□□□ 1
CLN3-204ENST00000357857 MOB2Q70IA6 237 aa21.32■■□□□ 1
CLN3-204ENST00000357857 ARMC9Q7Z3E5 817 aa21.32■■□□□ 1
CLN3-204ENST00000357857 KRI1Q8N9T8 703 aaKnown RBP21.32■■□□□ 1
CLN3-204ENST00000357857 FSIP1Q8NA03 581 aa21.32■■□□□ 1
CLN3-204ENST00000357857 RBM46Q8TBY0 533 aaKnown RBP21.32■■□□□ 1
CLN3-204ENST00000357857 MRPS27Q92552 414 aaKnown RBP21.32■■□□□ 1
CLN3-204ENST00000357857 CUTAO60888 179 aa21.31■■□□□ 1
CLN3-204ENST00000357857 FLOT1O75955 427 aa21.31■■□□□ 1
CLN3-204ENST00000357857 ZSCAN23Q3MJ62 389 aa21.31■■□□□ 1
CLN3-204ENST00000357857 CCDC183Q5T5S1 534 aa21.31■■□□□ 1
CLN3-204ENST00000357857 CCDC73Q6ZRK6 1079 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms