RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 TNFAIP1Q13829 316 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 MUM1L1Q5H9M0 696 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 CRACR2BQ8N4Y2 399 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-203ENST00000354674 TMEM39BQ9GZU3 492 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 KAT14Q9H8E8 782 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 VEZTQ9HBM0 779 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 BRMS1Q9HCU9 246 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 DNAI1Q9UI46 699 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 CPLX1O14810 134 aa11.46□□□□□ -0.57
SYNE1-203ENST00000354674 GRIN3BO60391 1043 aa11.46□□□□□ -0.57
SYNE1-203ENST00000354674 FMNL1O95466 1100 aaPredicted RBP11.46□□□□□ -0.57
SYNE1-203ENST00000354674 TNNI2P48788 182 aa11.46□□□□□ -0.57
SYNE1-203ENST00000354674 TBC1D10BQ4KMP7 808 aaPredicted RBP11.46□□□□□ -0.57
SYNE1-203ENST00000354674 PNMA1Q8ND90 353 aa11.46□□□□□ -0.57
SYNE1-203ENST00000354674 DDX11Q96FC9 970 aa11.46□□□□□ -0.57
SYNE1-203ENST00000354674 N4BP1O75113 896 aaKnown RBP11.46□□□□□ -0.58
SYNE1-203ENST00000354674 TOP1P11387 765 aaKnown RBP11.46□□□□□ -0.58
SYNE1-203ENST00000354674 H2AFXP16104 143 aaPredicted RBP11.46□□□□□ -0.58
SYNE1-203ENST00000354674 UBE2HP62256 183 aa11.46□□□□□ -0.58
SYNE1-203ENST00000354674 CERKLQ49MI3 558 aaPredicted RBP11.46□□□□□ -0.58
SYNE1-203ENST00000354674 ARMC3Q5W041 872 aa11.46□□□□□ -0.58
SYNE1-203ENST00000354674 FBXW10Q5XX13 1052 aa11.46□□□□□ -0.58
SYNE1-203ENST00000354674 CPLX2Q6PUV4 134 aaKnown RBP11.46□□□□□ -0.58
SYNE1-203ENST00000354674 FAM200AQ8TCP9 573 aa11.46□□□□□ -0.58
SYNE1-203ENST00000354674 TRPM4Q8TD43 1214 aa11.46□□□□□ -0.58
SYNE1-203ENST00000354674 L3MBTL3Q96JM7 780 aaPredicted RBP11.46□□□□□ -0.58
SYNE1-203ENST00000354674 CARD6Q9BX69 1037 aa11.46□□□□□ -0.58
SYNE1-203ENST00000354674 HACL1Q9UJ83 578 aa11.46□□□□□ -0.58
SYNE1-203ENST00000354674 MRVI1Q9Y6F6 885 aa11.46□□□□□ -0.58
SYNE1-203ENST00000354674 ASTN2O75129 1339 aaPredicted RBP11.45□□□□□ -0.58
SYNE1-203ENST00000354674 NEBLO76041 1014 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 DDNO94850 711 aaPredicted RBP11.45□□□□□ -0.58
SYNE1-203ENST00000354674 GUCY1A2P33402 732 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 EPS15P42566 896 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 SNW1Q13573 536 aaKnown RBP11.45□□□□□ -0.58
SYNE1-203ENST00000354674 GRM4Q14833 912 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 RBM26Q5T8P6 1007 aaKnown RBP11.45□□□□□ -0.58
SYNE1-203ENST00000354674 LRRC8AQ8IWT6 810 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 GOLGA5Q8TBA6 731 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 H3BQF6 201 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 MAGEA9P43362 315 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 HIRAP54198 1017 aaPredicted RBP11.45□□□□□ -0.58
SYNE1-203ENST00000354674 RASA3Q14644 834 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 RRP1BQ14684 758 aaKnown RBP11.45□□□□□ -0.58
SYNE1-203ENST00000354674 TMTC3Q6ZXV5 915 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 NUP133Q8WUM0 1156 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 MKL1Q969V6 931 aa11.45□□□□□ -0.58
SYNE1-203ENST00000354674 ORC3Q9UBD5 711 aaPredicted RBP11.45□□□□□ -0.58
SYNE1-203ENST00000354674 FAM196BA6NMK8 535 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 TTLL1O95922 423 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 F13A1P00488 732 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 GPR162Q16538 588 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 NAIF1Q69YI7 327 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 CDAN1Q8IWY9 1227 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 JPH2Q9BR39 696 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 MAD2L2Q9UI95 211 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 SNHG28P0DPA3 235 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 ACTN2P35609 894 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 ZNF165P49910 485 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 CEBPZQ03701 1054 aaKnown RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 TMEM179Q6ZVK1 233 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 FUCA2Q9BTY2 467 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 RNF26Q9BY78 433 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 NYAP2Q9P242 653 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 STX8Q9UNK0 236 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 PITPNM2Q9BZ72 1349 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 PALM3A6NDB9 673 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 JAG1P78504 1218 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 SSRP1Q08945 709 aaKnown RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 CDC37L1Q7L3B6 337 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 SIAH1Q8IUQ4 282 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 APOBEC3FQ8IUX4 373 aaKnown RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 PHKBQ93100 1093 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 TNMDQ9H2S6 317 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 KANSL2Q9H9L4 492 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 ADARB2Q9NS39 739 aaKnown RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 ARGLU1Q9NWB6 273 aaPredicted RBP11.44□□□□□ -0.58
SYNE1-203ENST00000354674 DACT1Q9NYF0 836 aa11.44□□□□□ -0.58
SYNE1-203ENST00000354674 GOLGA6L4A6NEF3 574 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 PRPF3O43395 683 aaKnown RBP11.43□□□□□ -0.58
SYNE1-203ENST00000354674 KIF5BP33176 963 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 MCTP2Q6DN12 878 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 CTCFLQ8NI51 663 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-203ENST00000354674 SUGCTQ9HAC7 445 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 SYNPO2Q9UMS6 1093 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 MYH4Q9Y623 1939 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 PHF20L1A8MW92 1017 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 PLEKHA8P1O95397 391 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 MAP3K11Q16584 847 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 ABCB5Q2M3G0 1257 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 SHROOM1Q2M3G4 852 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-203ENST00000354674 SRBD1Q8N5C6 995 aaKnown RBP11.43□□□□□ -0.58
SYNE1-203ENST00000354674 DEFB129Q9H1M3 183 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 SH3BP1Q9Y3L3 701 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 PPP2R3BQ9Y5P8 575 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 CNTNAP5Q8WYK1 1306 aa11.43□□□□□ -0.58
SYNE1-203ENST00000354674 SKAP2O75563 359 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-203ENST00000354674 SMARCA1P28370 1054 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 NUP62CLQ9H1M0 184 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms