RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 BMP6P22004 513 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 GMPSP49915 693 aaPredicted RBP9.77□□□□□ -0.85
TRIM55-204ENST00000353317 NPY5RQ15761 445 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 RESP18Q5W5W9 173 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 ARHGAP27Q6ZUM4 889 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 VSTM4Q8IW00 320 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 REXO1L1PQ8IX06 675 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 LRRC47Q8N1G4 583 aaKnown RBP9.77□□□□□ -0.85
TRIM55-204ENST00000353317 OGFOD1Q8N543 542 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 KAT14Q9H8E8 782 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 MYOZ2Q9NPC6 264 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 PI4KBQ9UBF8 816 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 GJA3Q9Y6H8 435 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 ATRNL1Q5VV63 1379 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 STK36Q9NRP7 1315 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 FAM237AA0A1B0GTK4 181 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 USP17L5A8MUK1 530 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 NPM3O75607 178 aaKnown RBP9.77□□□□□ -0.85
TRIM55-204ENST00000353317 BMS1Q14692 1282 aaKnown RBP9.77□□□□□ -0.85
TRIM55-204ENST00000353317 EARS2Q5JPH6 523 aaKnown RBP9.77□□□□□ -0.85
TRIM55-204ENST00000353317 TATDN1Q6P1N9 297 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 TMEM139Q8IV31 216 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 EHD4Q9H223 541 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 INTS13Q9NVM9 706 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 VPS54Q9P1Q0 977 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 PCDHA5Q9Y5H7 936 aa9.77□□□□□ -0.85
TRIM55-204ENST00000353317 PLIN4Q96Q06 1357 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 PALM3A6NDB9 673 aaPredicted RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 FAM205CA6NFA0 338 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 BTBD18B2RXH4 712 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 FOXN1O15353 648 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 CDKL5O76039 1030 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 TOP1P11387 765 aaKnown RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 NR5A1Q13285 461 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 GRM4Q14833 912 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 HSP90AA4PQ58FG1 418 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 TYW1BQ6NUM6 668 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 JMYQ8N9B5 988 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 MTMR14Q8NCE2 650 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 RGS22Q8NE09 1264 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 CSRNP1Q96S65 589 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 VEZTQ9HBM0 779 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 CCP110O43303 1012 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 PRPF3O43395 683 aaKnown RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 CBFA2T2O43439 604 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 ENTPD3O75355 529 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 PNMA6AP0CW24 399 aaPredicted RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 ZNF280AP59817 542 aaPredicted RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 GNL2Q13823 731 aaKnown RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 TBC1D10BQ4KMP7 808 aaPredicted RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 SPECC1Q5M775 1068 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 MIGA2Q7L4E1 593 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 MICALL2Q8IY33 904 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 CNNM3Q8NE01 707 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 UBXN4Q92575 508 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 DHX36Q9H2U1 1008 aaKnown RBP9.76□□□□□ -0.85
TRIM55-204ENST00000353317 KCNH3Q9ULD8 1083 aa9.76□□□□□ -0.85
TRIM55-204ENST00000353317 VWA3AA6NCI4 1184 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 MPHOSPH10O00566 681 aaKnown RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 WNT7AO00755 349 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 URI1O94763 535 aaPredicted RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 ZRANB2O95218 330 aaKnown RBP eCLIP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 HLA-DOAP06340 250 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 SEPT2Q15019 361 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 KRBA2Q6ZNG9 492 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 RNF26Q9BY78 433 aaPredicted RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 UBA5Q9GZZ9 404 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 SWAP70Q9UH65 585 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CNOT7Q9UIV1 285 aaKnown RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 HDAC9Q9UKV0 1011 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 FRMPD2Q68DX3 1309 aaPredicted RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CCDC196A0A1B0GTZ2 297 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 TADA3O75528 432 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 DEXIO95424 95 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CALM1P0DP23 149 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CALM2P0DP24 149 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CALM3P0DP25 149 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 PLA2G4AP47712 749 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 TOB1P50616 345 aaPredicted RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CERKLQ49MI3 558 aaPredicted RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CPLX2Q6PUV4 134 aaKnown RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 DLK2Q6UY11 383 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 FAM177A1Q8N128 213 aaPredicted RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CTCFLQ8NI51 663 aaPredicted RBP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 FAM151AQ8WW52 585 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 GPKOWQ92917 476 aaPredicted RBP eCLIP9.75□□□□□ -0.85
TRIM55-204ENST00000353317 CARD6Q9BX69 1037 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 ZNF287Q9HBT7 754 aa9.75□□□□□ -0.85
TRIM55-204ENST00000353317 A0A1W2PRG0 241 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 ARHGAP6O43182 974 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 CUTAO60888 179 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 MMP1P03956 469 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 PDHBP11177 359 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 MDM2Q00987 491 aaPredicted RBP9.74□□□□□ -0.85
TRIM55-204ENST00000353317 TNIP1Q15025 636 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 TAF3Q5VWG9 929 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 TTBK2Q6IQ55 1244 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 MNS1Q8NEH6 495 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 TEPSINQ96N21 525 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms