RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ADPGKQ9BRR6 497 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 FAM208AQ9UK61 1670 aaKnown RBP11.35□□□□□ -0.59
USP54-201ENST00000339859 ZNF165P49910 485 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 FAM160A1Q05DH4 1040 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 RAET1EQ8TD07 263 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 TMEM106CQ9BVX2 250 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 MRPL44Q9H9J2 332 aaKnown RBP11.35□□□□□ -0.59
USP54-201ENST00000339859 WDR19Q8NEZ3 1342 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 ADD1P35611 737 aaKnown RBP11.35□□□□□ -0.59
USP54-201ENST00000339859 TRAPPC10P48553 1259 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 TKFCQ3LXA3 575 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 FLT1P17948 1338 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 ATRNO75882 1429 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 MYL3P08590 195 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 AP3B2Q13367 1082 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 MTA3Q9BTC8 594 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 RPAP3Q9H6T3 665 aaPredicted RBP11.35□□□□□ -0.59
USP54-201ENST00000339859 DISP2A7MBM2 1401 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 PSAPP07602 524 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 GTF2A2P52657 109 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 YARSP54577 528 aaKnown RBP11.34□□□□□ -0.59
USP54-201ENST00000339859 KLHL40Q2TBA0 621 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 CEP135Q66GS9 1140 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 GPC2Q8N158 579 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 ZNF280CQ8ND82 737 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 ALS2CR12Q96Q35 445 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 POLLQ9UGP5 575 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 AHDC1Q5TGY3 1603 aaPredicted RBP11.34□□□□□ -0.59
USP54-201ENST00000339859 ABCD1P33897 745 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 PPP2R5AQ15172 486 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 CPLX3Q8WVH0 158 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 LPAR1Q92633 364 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 TPCN1Q9ULQ1 816 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 GCNT3O95395 438 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 SNX16P57768 344 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 STXBP2Q15833 593 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 UVSSAQ2YD98 709 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 CCDC117Q8IWD4 279 aaPredicted RBP11.34□□□□□ -0.59
USP54-201ENST00000339859 RAVER2Q9HCJ3 691 aaKnown RBP11.34□□□□□ -0.59
USP54-201ENST00000339859 SEPT9Q9UHD8 586 aaPredicted RBP11.34□□□□□ -0.59
USP54-201ENST00000339859 ORC4O43929 436 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 CTNND1O60716 968 aaKnown RBP11.34□□□□□ -0.59
USP54-201ENST00000339859 IGBP1P78318 339 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 LRRC45Q96CN5 670 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 PSMD1Q99460 953 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 RTEL1Q9NZ71 1219 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 GNAT1P11488 350 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 TECP42680 631 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 DMP1Q13316 513 aaPredicted RBP11.34□□□□□ -0.59
USP54-201ENST00000339859 DPH6Q7L8W6 267 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 SAMD7Q7Z3H4 446 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 FOXP1Q9H334 677 aaPredicted RBP11.34□□□□□ -0.59
USP54-201ENST00000339859 LRFN2Q9ULH4 789 aa11.34□□□□□ -0.59
USP54-201ENST00000339859 ZBTB5O15062 677 aa11.33□□□□□ -0.59
USP54-201ENST00000339859 P4HA1P13674 534 aa11.33□□□□□ -0.59
USP54-201ENST00000339859 UBXN2AP68543 259 aa11.33□□□□□ -0.59
USP54-201ENST00000339859 DCAF17Q5H9S7 520 aaPredicted RBP11.33□□□□□ -0.59
USP54-201ENST00000339859 MXD3Q9BW11 206 aa11.33□□□□□ -0.59
USP54-201ENST00000339859 ACAD9Q9H845 621 aa11.33□□□□□ -0.59
USP54-201ENST00000339859 ASB14A6NK59 587 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 TRAF5O00463 557 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 MTMR2Q13614 643 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 NEK11Q8NG66 645 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 DEFB129Q9H1M3 183 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 PCDHB13Q9Y5F0 798 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 FAM196BA6NMK8 535 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 TNPO2O14787 897 aaKnown RBP11.33□□□□□ -0.6
USP54-201ENST00000339859 WDR46O15213 610 aaKnown RBP11.33□□□□□ -0.6
USP54-201ENST00000339859 SCRN1Q12765 414 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 PRPF38AQ8NAV1 312 aaKnown RBP11.33□□□□□ -0.6
USP54-201ENST00000339859 UIMC1Q96RL1 719 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 CTNNA2P26232 953 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 RCAN1P53805 252 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 HERC4Q5GLZ8 1057 aaPredicted RBP11.33□□□□□ -0.6
USP54-201ENST00000339859 TMC6Q7Z403 805 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 GPBP1Q86WP2 473 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 KIFAP3Q92845 792 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 TMEM47Q9BQJ4 181 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 RNF216Q9NWF9 866 aaPredicted RBP11.33□□□□□ -0.6
USP54-201ENST00000339859 NEDD4P46934 1319 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 KIF5CO60282 957 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 ATF7P17544 494 aaPredicted RBP11.33□□□□□ -0.6
USP54-201ENST00000339859 SBK1Q52WX2 424 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 GOLGA5Q8TBA6 731 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 CTNND2Q9UQB3 1225 aa11.33□□□□□ -0.6
USP54-201ENST00000339859 UBASH3AP57075 661 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 USP50Q70EL3 339 aaPredicted RBP11.32□□□□□ -0.6
USP54-201ENST00000339859 MB21D1Q8N884 522 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 CEP95Q96GE4 821 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 AKT3Q9Y243 479 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 POLR2DO15514 142 aaKnown RBP11.32□□□□□ -0.6
USP54-201ENST00000339859 LONP1P36776 959 aaKnown RBP11.32□□□□□ -0.6
USP54-201ENST00000339859 C12orf60Q5U649 245 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 A0A1B0GVL5 298 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 CETN3O15182 167 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 PRPF6O94906 941 aaKnown RBP11.32□□□□□ -0.6
USP54-201ENST00000339859 HMGCS2P54868 508 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 GRM4Q14833 912 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 ANO6Q4KMQ2 910 aa11.32□□□□□ -0.6
USP54-201ENST00000339859 GOLGA1Q92805 767 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms