RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 KINO60870 393 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 EPB41P11171 864 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 LMNB1P20700 586 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 PBX1P40424 430 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 SLC8A3P57103 927 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 ATL3Q6DD88 541 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 NSUN7Q8NE18 718 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 FAM227BQ96M60 508 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 SLC40A1Q9NP59 571 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 AP1G2O75843 785 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 RAB27AP51159 221 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 RPS6KA3P51812 740 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 SKIDA1Q1XH10 827 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 KIF4BQ2VIQ3 1234 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 LINC00301Q8NCQ3 95 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 AENQ8WTP8 325 aaKnown RBP6.29□□□□□ -1.4
CSDE1-202ENST00000339438 MRPS27Q92552 414 aaKnown RBP6.29□□□□□ -1.4
CSDE1-202ENST00000339438 FAM210AQ96ND0 272 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 ASTN2O75129 1339 aaPredicted RBP6.29□□□□□ -1.4
CSDE1-202ENST00000339438 FGRP09769 529 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 NAP1L1P55209 391 aaKnown RBP6.29□□□□□ -1.4
CSDE1-202ENST00000339438 RHBDL3P58872 404 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 OS9Q13438 667 aaPredicted RBP6.29□□□□□ -1.4
CSDE1-202ENST00000339438 TUBB2AQ13885 445 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 C1QTNF12Q5T7M4 302 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 ADGRA1Q86SQ6 560 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 C2CD5Q86YS7 1000 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 CNBD1Q8NA66 436 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 MYD88Q99836 296 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 TUBB2BQ9BVA1 445 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 CAPS2Q9BXY5 557 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 KIF9Q9HAQ2 790 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 GGA2Q9UJY4 613 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 HPSEQ9Y251 543 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 LOXHD1Q8IVV2 1947 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 PLIN4Q96Q06 1357 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 FAM237AA0A1B0GTK4 181 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 IARSP41252 1262 aaKnown RBP6.29□□□□□ -1.4
CSDE1-202ENST00000339438 STK3Q13188 491 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 SNX1Q13596 522 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 RCSD1Q6JBY9 416 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 FUKQ8N0W3 1084 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 SEC62Q99442 399 aaKnown RBP6.29□□□□□ -1.4
CSDE1-202ENST00000339438 SH3GL3Q99963 347 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 SIL1Q9H173 461 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 EBF2Q9HAK2 575 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 PCDHAC2Q9Y5I4 1007 aa6.29□□□□□ -1.4
CSDE1-202ENST00000339438 COL4A4P53420 1690 aaPredicted RBP6.29□□□□□ -1.4
CSDE1-202ENST00000339438 DNM1LO00429 736 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 TUBBP07437 444 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 MDM2Q00987 491 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 BYSLQ13895 437 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 NR1I3Q14994 352 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 ANKRD1Q15327 319 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 ACCSLQ4AC99 568 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 LRRC24Q50LG9 513 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 HSP90B2PQ58FF3 399 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 NCAPH2Q6IBW4 605 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 TRAPPC11Q7Z392 1133 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 ARMC2Q8NEN0 867 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 AGXT2Q9BYV1 514 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 SLC39A2Q9NP94 309 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 TPX2Q9ULW0 747 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 A0A0D9SFI3 127 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 TARSL2A2RTX5 802 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 MGRN1O60291 552 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 UBTFL1P0CB47 393 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 TOP1P11387 765 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 FDPSP14324 419 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 PECAM1P16284 738 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 NF2P35240 595 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 MKRN4PQ13434 485 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 WHAMMP3Q1A5X7 153 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CCDC40Q4G0X9 1142 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CC2D2BQ6DHV5 1058 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 SLC35F6Q8N357 371 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 DRAXINQ8NBI3 349 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 RABEP2Q9H5N1 569 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CWC25Q9NXE8 425 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 GPRC5DQ9NZD1 345 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CLIC4Q9Y696 253 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 MYO1BO43795 1136 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CAND2O75155 1236 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 SF3B2Q13435 895 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 DALRD3Q5D0E6 543 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 LDLRAD1Q5T700 205 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 NAA35Q5VZE5 725 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CCDC73Q6ZRK6 1079 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 ZNF589Q86UQ0 364 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 FAM76AQ8TAV0 307 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 PANX2Q96RD6 677 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 SETDB2Q96T68 719 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CDC5LQ99459 802 aaKnown RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 TAF1DQ9H5J8 278 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 LZTFL1Q9NQ48 299 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 IRS4O14654 1257 aaPredicted RBP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 SMNDC1O75940 238 aaKnown RBP eCLIP6.28□□□□□ -1.4
CSDE1-202ENST00000339438 GNGT1P63211 74 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 MYL5Q02045 173 aa6.28□□□□□ -1.4
CSDE1-202ENST00000339438 CXCL9Q07325 125 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms