RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 L3MBTL3Q96JM7 780 aaPredicted RBP4.57□□□□□ -1.68
NEDD4-201ENST00000338963 NACAP1Q9BZK3 213 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 XPO4Q9C0E2 1151 aaKnown RBP4.57□□□□□ -1.68
NEDD4-201ENST00000338963 TIMMDC1Q9NPL8 285 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 LRCH1Q9Y2L9 728 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 TSC22D4Q9Y3Q8 395 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 AREL1O15033 823 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 RAPGEF3O95398 923 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 ARHGEF6Q15052 776 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 MAP7D3Q8IWC1 876 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 TCP11L2Q8N4U5 519 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 DNAJC9Q8WXX5 260 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 MRPS27Q92552 414 aaKnown RBP4.57□□□□□ -1.68
NEDD4-201ENST00000338963 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.57□□□□□ -1.68
NEDD4-201ENST00000338963 GRIN2DO15399 1336 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 CCT8L1PA6NM43 557 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 UBASH3AP57075 661 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 DHX9Q08211 1270 aaKnown RBP4.57□□□□□ -1.68
NEDD4-201ENST00000338963 DCTN2Q13561 401 aaKnown RBP4.57□□□□□ -1.68
NEDD4-201ENST00000338963 NFE2L2Q16236 605 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 MAP3K21Q5TCX8 1036 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 ARMCX5Q6P1M9 558 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 TMEM154Q6P9G4 183 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 TUBA3EQ6PEY2 450 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 CCNI2Q6ZMN8 369 aaPredicted RBP4.57□□□□□ -1.68
NEDD4-201ENST00000338963 MMGT1Q8N4V1 131 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 TUBB6Q9BUF5 446 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 RAB17Q9H0T7 212 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 PLEKHA4Q9H4M7 779 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 PARVGQ9HBI0 331 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 NCKAP5LQ9HCH0 1330 aa4.57□□□□□ -1.68
NEDD4-201ENST00000338963 O00370 1275 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 LSP1P33241 339 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 RGS2P41220 211 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 SPAG1Q07617 926 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PKD2Q13563 968 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 WASHC2DQ5SRD0 308 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 AGGF1Q8N302 714 aaeCLIP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 TMEM57Q8N5G2 664 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ARL10Q8N8L6 244 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 GIMAP1Q8WWP7 306 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 CAVIN3Q969G5 261 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 SEC62Q99442 399 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ABCC12Q96J65 1359 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 TBKBP1A7MCY6 615 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 YEATS4O95619 227 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 HSPA8P11142 646 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 HOXD10P28358 340 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PHBP35232 272 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PAFAH1B1P43034 410 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 SLC7A5Q01650 507 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 GUCY1B3Q02153 619 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 KCNA1Q09470 495 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ZNF569Q5MCW4 686 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 EFHD2Q96C19 240 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 NUP58Q9BVL2 599 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 OXCT2Q9BYC2 517 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 TBC1D7Q9P0N9 293 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 CARMIL1Q5VZK9 1371 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 KDM5CP41229 1560 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 HTR3EA5X5Y0 456 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 HIP1O00291 1037 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 MAP3K7O43318 606 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 N4BP1O75113 896 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ATN1P54259 1190 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 CCDC6Q16204 474 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 AGBL2Q5U5Z8 902 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 DAAM2Q86T65 1068 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 CNBD1Q8NA66 436 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 TNIP2Q8NFZ5 429 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ENOX1Q8TC92 643 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ATP8B4Q8TF62 1192 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 APPBP2Q92624 585 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 ANKRD36BP1Q96IX9 119 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 VPS50Q96JG6 964 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 SNX27Q96L92 541 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 SPZ1Q9BXG8 430 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 FHDC1Q9C0D6 1143 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 HERC5Q9UII4 1024 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 GTF3C4Q9UKN8 822 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PNMA2Q9UL42 364 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 MKL2Q9ULH7 1088 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PIK3R4Q99570 1358 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 TTC34A8MYJ7 566 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 HOXD12P35452 270 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PDE4BQ07343 736 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 MKRN3Q13064 507 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 SPATA1Q5VX52 437 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 EIF1ADQ8N9N8 165 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 NCSTNQ92542 709 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 KIFC2Q96AC6 838 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 NEK1Q96PY6 1258 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 TTC1Q99614 292 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 RIOK1Q9BRS2 568 aaKnown RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 SIKE1Q9BRV8 207 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 RPAP3Q9H6T3 665 aaPredicted RBP4.56□□□□□ -1.68
NEDD4-201ENST00000338963 PLCB1Q9NQ66 1216 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 KRT82Q9NSB4 513 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 EURLQ9NYK6 297 aa4.56□□□□□ -1.68
NEDD4-201ENST00000338963 NOB1Q9ULX3 412 aaKnown RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms