RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 ZKSCAN4Q969J2 545 aaPredicted RBP4.75□□□□□ -1.65
MCF2-201ENST00000338585 ZNF341Q9BYN7 854 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 ZMYND12Q9H0C1 365 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 BRMS1Q9HCU9 246 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 TMEM260Q9NX78 707 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 PCDHA6Q9UN73 950 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 TMX2Q9Y320 296 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 PCDHA8Q9Y5H6 950 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 ATAD5Q96QE3 1844 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 PNMA6FA0A0J9YX94 578 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 A0A1B0GVL5 298 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 FSD2A1L4K1 749 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 ADM5C9JUS6 153 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 ZBTB5O15062 677 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 ASNSP08243 561 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 CALML3P27482 149 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 LMOD1P29536 600 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 IKQ13123 557 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 PRKG1Q13976 671 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 ZNF174Q15697 407 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 CDC37Q16543 378 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 SPECC1Q5M775 1068 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 ADALQ6DHV7 355 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 SHC4Q6S5L8 630 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 DAGLBQ8NCG7 672 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 CCDC148Q8NFR7 591 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 MTMR8Q96EF0 704 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 VCPKMTQ9H867 229 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 ADARB2Q9NS39 739 aaKnown RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 FBXO28Q9NVF7 368 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 TRIM75PA6NK02 468 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 ATMINO43313 823 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 NDUFA8P51970 172 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 SNW1Q13573 536 aaKnown RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 INF2Q27J81 1249 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 TTC38Q5R3I4 469 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 SYDE2Q5VT97 1194 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 JAKMIP3Q5VZ66 844 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 ENGASEQ8NFI3 743 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 MRPS27Q92552 414 aaKnown RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 SYAP1Q96A49 352 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 WRNIP1Q96S55 665 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 FEZ1Q99689 392 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 GOPCQ9HD26 462 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 BIN2Q9UBW5 565 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 FBXO2Q9UK22 296 aaPredicted RBP4.74□□□□□ -1.65
MCF2-201ENST00000338585 PRR12Q9ULL5 1215 aa4.74□□□□□ -1.65
MCF2-201ENST00000338585 CCDC194A0A1B0GVG4 234 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 A0A1W2PQ27 194 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 A0A1W2PQ64 194 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 A0A1W2PQD8 194 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 GOLGA6L3A6NEY3 463 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 CTNND1O60716 968 aaKnown RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 PPP6R2O75170 966 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 PFKFB1P16118 471 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 MCM7P33993 719 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 ADCY7P51828 1080 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 FAM160A1Q05DH4 1040 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 UBE2SQ16763 222 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USH1GQ495M9 461 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 DCAF15Q66K64 600 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 CCDC73Q6ZRK6 1079 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP49Q70CQ1 688 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 CKAP2LQ8IYA6 745 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 FMR1NBQ8N0W7 255 aaPredicted RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 ERCC4Q92889 916 aaPredicted RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 NUP62CLQ9H1M0 184 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 CLSTN2Q9H4D0 955 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 C6orf50Q9HD87 102 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 SYNPO2Q9UMS6 1093 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 NOL7Q9UMY1 257 aaKnown RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 PCDHA1Q9Y5I3 950 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 ESYT2A0FGR8 921 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 CUTAO60888 179 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 PTPREP23469 700 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 STAT2P52630 851 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 PTGDRQ13258 359 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 MTMR2Q13614 643 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 GALNT17Q6IS24 598 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 DPY19L2Q6NUT2 758 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 LRSAM1Q6UWE0 723 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 BTNL9Q6UXG8 535 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 REXO1Q8N1G1 1221 aaKnown RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 JMYQ8N9B5 988 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 KRI1Q8N9T8 703 aaKnown RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 CCDC12Q8WUD4 166 aaPredicted RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 KIFC2Q96AC6 838 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 DCPSQ96C86 337 aaKnown RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 L3MBTL3Q96JM7 780 aaPredicted RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 RBSNQ9H1K0 784 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 ZNF112Q9UJU3 913 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 SMCHD1A6NHR9 2005 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 DOCK1Q14185 1865 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 A0A087WWV3 80 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 GLTPD2A6NH11 291 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 POTECB2RU33 542 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L15C9J2P7 530 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms