RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 PPP1R21Q6ZMI0 780 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 NEK8Q86SG6 692 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 PHKBQ93100 1093 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 FAM204AQ9H8W3 233 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 FBLN1P23142 703 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 COPB1P53618 953 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 PPP4R1Q8TF05 950 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 ZFP91Q96JP5 570 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 PPP1R12CQ9BZL4 782 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 FANCLQ9NW38 375 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 DAAM1Q9Y4D1 1078 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 PNPLA6Q8IY17 1366 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 TYW1BQ6NUM6 668 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 DDX23Q9BUQ8 820 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 STX2P32856 288 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 KIF11P52732 1056 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 ADKP55263 362 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 BIRC3Q13489 604 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 ZNF658Q5TYW1 1059 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 COL4A3BPQ9Y5P4 624 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 PDE6AP16499 860 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 TCIRG1Q13488 830 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 LONRF2Q1L5Z9 754 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 GAS2L3Q86XJ1 694 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 CCDC160A6NGH7 325 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 FOSP01100 380 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 DEPDC5O75140 1603 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 TMEM110-MUSTN1A8MSY1 372 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 NR1H3Q13133 447 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 TARSL2A2RTX5 802 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 GNGT1P63211 74 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 ARHGEF25Q86VW2 580 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 C17orf53Q8N3J3 647 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 CNBD1Q8NA66 436 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 ARMT1Q9H993 441 aa11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 PROM2Q8N271 834 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 PDE11AQ9HCR9 933 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 FOXP2O15409 715 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 LINC00301Q8NCQ3 95 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 BCAS4Q8TDM0 211 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 PALD1Q9ULE6 856 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 ANO9A1A5B4 782 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 SLC1A4P43007 532 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 RRP15Q9Y3B9 282 aaKnown RBP11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 KRT5P13647 590 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 KCNA6P17658 529 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 PTH1RQ03431 593 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 TMC4Q7Z404 712 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 NSUN7Q8NE18 718 aaKnown RBP11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 LRRC59Q96AG4 307 aaKnown RBP11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 EAF2Q96CJ1 260 aaPredicted RBP11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 CLTCQ00610 1675 aaKnown RBP11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 IFNL3Q8IZI9 196 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 CCDC197Q8NCU1 140 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 CLGNO14967 610 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 TIMM10P62072 90 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 DEUP1Q05D60 604 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 PGRMC1O00264 195 aaKnown RBP11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 ZBED6P86452 979 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 OTUD6AQ7L8S5 288 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 CAPN7Q9Y6W3 813 aa11.29□□□□□ -0.6
CCDC88A-202ENST00000336838 ATP5HO75947 161 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 GCNT3O95395 438 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 TSGA10IPQ3SY00 556 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 ASPRV1Q53RT3 343 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 GPATCH4Q5T3I0 446 aaKnown RBP11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 NUF2Q9BZD4 464 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 IFNAR1P17181 557 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 TCHPQ9BT92 498 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 FGAP02671 866 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 RXRAP19793 462 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 PLA2G4DQ86XP0 818 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 FBXO41Q8TF61 875 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 MMP1P03956 469 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 IL9RQ01113 521 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 MAN2A1Q16706 1144 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 SERTAD1Q9UHV2 236 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 PREX1Q8TCU6 1659 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 SRPRBQ9Y5M8 271 aaKnown RBP11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 IQSEC2Q5JU85 1478 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 ZNF189O75820 626 aaPredicted RBP11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 RESP18Q5W5W9 173 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 TUBGCP2Q9BSJ2 902 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 AATFQ9NY61 560 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 GGA1Q9UJY5 639 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 SLC26A4O43511 780 aa11.28□□□□□ -0.6
CCDC88A-202ENST00000336838 EXOC3O60645 756 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 TTLL7Q6ZT98 887 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 NGLY1Q96IV0 654 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 GBP5Q96PP8 586 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 CCDC188H7C350 402 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 DRP2Q13474 957 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 APOA5Q6Q788 366 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 SYMPKQ92797 1274 aaKnown RBP11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 MXD3Q9BW11 206 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 LSM14BQ9BX40 385 aaKnown RBP11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 MYH6P13533 1939 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 FKBP3Q00688 224 aaKnown RBP11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 ARHGEF2Q92974 986 aaKnown RBP11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 KIFC2Q96AC6 838 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms