RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 STXBP3O00186 592 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 CYP21A2P08686 494 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 RXRBP28702 533 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 ALDH3A1P30838 453 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 MDH1P40925 334 aaKnown RBP13.15□□□□□ -0.3
SHMT2-201ENST00000328923 FKBP15Q5T1M5 1219 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 EHBP1Q8NDI1 1231 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 BOLA2Q9H3K6 86 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 TUBE1Q9UJT0 475 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 LEMD3Q9Y2U8 911 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 CARMIL3Q8ND23 1372 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 GPR75-ASB3A0A0A6YYF3 556 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 NR1D1P20393 614 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 MAP3K12Q12852 859 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 ENOX2Q16206 610 aaKnown RBP13.15□□□□□ -0.3
SHMT2-201ENST00000328923 RASGRP2Q7LDG7 609 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 PHC3Q8NDX5 983 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 C17orf50Q8WW18 174 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 ZNF274Q96GC6 653 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-201ENST00000328923 TRIM7Q9C029 511 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 PREBQ9HCU5 417 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 PHF24Q9UPV7 400 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 ASB3Q9Y575 518 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 SCN11AQ9UI33 1791 aa13.15□□□□□ -0.3
SHMT2-201ENST00000328923 LRRD1A4D1F6 860 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 PDLIM1O00151 329 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 BACH1O14867 736 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 HSF2BPO75031 334 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 LUC7L3O95232 432 aaKnown RBP13.14□□□□□ -0.31
SHMT2-201ENST00000328923 TATP17735 454 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-201ENST00000328923 POLE2P56282 527 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 BYSLQ13895 437 aaKnown RBP13.14□□□□□ -0.31
SHMT2-201ENST00000328923 STK38Q15208 465 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 LONRF3Q496Y0 759 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 Q4G0T1 1027 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 TRAPPC11Q7Z392 1133 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 FBXL16Q8N461 479 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 MIPOL1Q8TD10 442 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 CCHCR1Q8TD31 782 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 CPLX3Q8WVH0 158 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 CCDC8Q9H0W5 538 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-201ENST00000328923 ZNF609O15014 1411 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 AKR1B15C9JRZ8 316 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-201ENST00000328923 CMA1P23946 247 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 NBPF15Q8N660 670 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 CNBD1Q8NA66 436 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 ZIM3Q96PE6 472 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 ZWILCHQ9H900 591 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 GALNT8Q9NY28 637 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 TLR7Q9NYK1 1049 aaKnown RBP13.14□□□□□ -0.31
SHMT2-201ENST00000328923 DBF4Q9UBU7 674 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-201ENST00000328923 HEG1Q9ULI3 1381 aa13.14□□□□□ -0.31
SHMT2-201ENST00000328923 SPTLC2O15270 562 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 EVI5O60447 810 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 GJA8P48165 433 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 EXOSC10Q01780 885 aaKnown RBP13.13□□□□□ -0.31
SHMT2-201ENST00000328923 DEUP1Q05D60 604 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 ADAM9Q13443 819 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 TRIM68Q6AZZ1 485 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 KSR2Q6VAB6 950 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 FAM114A1Q8IWE2 563 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 SPICE1Q8N0Z3 855 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 SH3TC1Q8TE82 1336 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 DTNBP1Q96EV8 351 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 SEC16BQ96JE7 1060 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 C8orf37Q96NL8 207 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 NDST4Q9H3R1 872 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 ARHGEF10LQ9HCE6 1279 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.13□□□□□ -0.31
SHMT2-201ENST00000328923 CYP11B2P19099 503 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 MRPS25P82663 173 aaKnown RBP13.13□□□□□ -0.31
SHMT2-201ENST00000328923 RIPK1Q13546 671 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 MCMDC2Q4G0Z9 681 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 NBPF14Q5TI25 921 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 ALS2CLQ60I27 953 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 UPF1Q92900 1129 aaKnown RBP eCLIP13.13□□□□□ -0.314e-7■■■■□ 25.7
SHMT2-201ENST00000328923 PANX2Q96RD6 677 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 ARPC5LQ9BPX5 153 aa13.13□□□□□ -0.31
SHMT2-201ENST00000328923 KDM6AO15550 1401 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-201ENST00000328923 GRM8O00222 908 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 PPIP5K2O43314 1243 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 MBD4O95243 580 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 PARP1P09874 1014 aaKnown RBP13.12□□□□□ -0.31
SHMT2-201ENST00000328923 PHKG2P15735 406 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 CNGA1P29973 690 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 C2orf54Q08AI8 447 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 EZH2Q15910 746 aaKnown RBP13.12□□□□□ -0.31
SHMT2-201ENST00000328923 ANKRD20A2Q5SQ80 823 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 ANKRD20A1Q5TYW2 823 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 ANKRD20A3Q5VUR7 823 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 HDAC7Q8WUI4 952 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 MAIP1Q8WWC4 291 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 CCT6BQ92526 530 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.12□□□□□ -0.31
SHMT2-201ENST00000328923 PKD1L3Q7Z443 1732 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 NPTXRO95502 500 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 PABPC1LQ4VXU2 614 aaKnown RBP13.12□□□□□ -0.31
SHMT2-201ENST00000328923 ZMYM1Q5SVZ6 1142 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 STOX1Q6ZVD7 989 aa13.12□□□□□ -0.31
SHMT2-201ENST00000328923 TBC1D1Q86TI0 1168 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms