RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 GYPCP04921 128 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 FXR1P51114 621 aaKnown RBP eCLIP18.13■□□□□ 0.49
USHBP1-202ENST00000324554 SP8Q8IXZ3 490 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 MXD3Q9BW11 206 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 PARD6BQ9BYG5 372 aa18.13■□□□□ 0.49
USHBP1-202ENST00000324554 F8W031 263 aaPredicted RBP18.12■□□□□ 0.49
USHBP1-202ENST00000324554 CYTH3O43739 400 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 TSPY3P0CV98 308 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 TSPY8P0CW00 308 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 NPR1P16066 1061 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 PDE6BP35913 854 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 CCT6AP40227 531 aaKnown RBP18.12■□□□□ 0.49
USHBP1-202ENST00000324554 KRT31Q15323 416 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 ZNF658Q5TYW1 1059 aaPredicted RBP18.12■□□□□ 0.49
USHBP1-202ENST00000324554 ITIH6Q6UXX5 1313 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 RPN1P04843 607 aaKnown RBP18.12■□□□□ 0.49
USHBP1-202ENST00000324554 TXLNAP40222 546 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 GNAQP50148 359 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 GTF2IP78347 998 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 PAK1Q13153 545 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 WWC2Q6AWC2 1192 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 C2CD5Q86YS7 1000 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 SLC44A5Q8NCS7 719 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 TGFBRAP1Q8WUH2 860 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 STK32BQ9NY57 414 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 PODXL2Q9NZ53 605 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 LIMA1Q9UHB6 759 aaKnown RBP18.12■□□□□ 0.49
USHBP1-202ENST00000324554 PCDHA6Q9UN73 950 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 PCDHA8Q9Y5H6 950 aa18.12■□□□□ 0.49
USHBP1-202ENST00000324554 LRRC10BA6NIK2 292 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 BAG3O95817 575 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 PPP4CP60510 307 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 MFSD14BQ5SR56 506 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 RABGGTAQ92696 567 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 ZSWIM4Q9H7M6 989 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 DISC1Q9NRI5 854 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 TCP11L1Q9NUJ3 509 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 RMND1Q9NWS8 449 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 MYH8P13535 1937 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 CCDC194A0A1B0GVG4 234 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 ERICH4A6NGS2 130 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 HMGB2P26583 209 aaKnown RBP18.11■□□□□ 0.49
USHBP1-202ENST00000324554 STAT6P42226 847 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 GSTO1P78417 241 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 CCDC178Q5BJE1 867 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 RASGRP2Q7LDG7 609 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 AMOTL1Q8IY63 956 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 NELFBQ8WX92 580 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 UBXN6Q9BZV1 441 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 NAV1Q8NEY1 1877 aa18.11■□□□□ 0.49
USHBP1-202ENST00000324554 RNF225M0QZC1 329 aaPredicted RBP18.1■□□□□ 0.49
USHBP1-202ENST00000324554 DPP8Q6V1X1 898 aaPredicted RBP18.1■□□□□ 0.49
USHBP1-202ENST00000324554 CNGA4Q8IV77 575 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 DAGLBQ8NCG7 672 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 CCDC148Q8NFR7 591 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 FBXO41Q8TF61 875 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 GOLGA1Q92805 767 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 MASTLQ96GX5 879 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 TMEM60Q9H2L4 133 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 GDAQ9Y2T3 454 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 STXBP3O00186 592 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 ABL1P00519 1130 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 IL1R1P14778 569 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 NAALADL2Q58DX5 795 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 HEATR3Q7Z4Q2 680 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 ZNF444Q8N0Y2 327 aaPredicted RBP18.1■□□□□ 0.49
USHBP1-202ENST00000324554 TMEM47Q9BQJ4 181 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 BARHL2Q9NY43 387 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 STX8Q9UNK0 236 aa18.1■□□□□ 0.49
USHBP1-202ENST00000324554 PALM3A6NDB9 673 aaPredicted RBP18.09■□□□□ 0.49
USHBP1-202ENST00000324554 N4BP3O15049 544 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 POLR3GO15318 223 aaPredicted RBP18.09■□□□□ 0.49
USHBP1-202ENST00000324554 ATP8B1O43520 1251 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 FECHP22830 423 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 ALDH1B1P30837 517 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 SPAG1Q07617 926 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 DTHD1Q6ZMT9 781 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 C15orf52Q6ZUT6 534 aaKnown RBP18.09■□□□□ 0.49
USHBP1-202ENST00000324554 MAPKAPK5Q8IW41 473 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 CCDC51Q96ER9 411 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 RTFDC1Q9BY42 306 aaPredicted RBP18.09■□□□□ 0.49
USHBP1-202ENST00000324554 ZC3H12CQ9C0D7 883 aaKnown RBP18.09■□□□□ 0.49
USHBP1-202ENST00000324554 KCNQ5Q9NR82 932 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 MTMR7Q9Y216 660 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 PP2D1A8MPX8 630 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 RASA1P20936 1047 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 PRCPP42785 496 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 COPB1P53618 953 aaKnown RBP18.09■□□□□ 0.49
USHBP1-202ENST00000324554 INF2Q27J81 1249 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 TCP11X2Q5H9J9 407 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 GALNT17Q6IS24 598 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 ACRBPQ8NEB7 543 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 SAP30BPQ9UHR5 308 aaKnown RBP18.09■□□□□ 0.49
USHBP1-202ENST00000324554 MAPK8IP1Q9UQF2 711 aa18.09■□□□□ 0.49
USHBP1-202ENST00000324554 KCNJ18B7U540 433 aa18.08■□□□□ 0.49
USHBP1-202ENST00000324554 KIF5CO60282 957 aa18.08■□□□□ 0.49
USHBP1-202ENST00000324554 CYP2C19P33261 490 aa18.08■□□□□ 0.49
USHBP1-202ENST00000324554 ERVK-24P63145 666 aa18.08■□□□□ 0.49
USHBP1-202ENST00000324554 FAM193AP78312 1265 aa18.08■□□□□ 0.49
USHBP1-202ENST00000324554 SF3B2Q13435 895 aaKnown RBP18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms