RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PACSIN2Q9UNF0 486 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 POTEFA5A3E0 1075 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 PTPN1P18031 435 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 EVA1CP58658 441 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 L3MBTL3Q96JM7 780 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 KLHL25Q9H0H3 589 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 CREBZFQ9NS37 354 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 TRAK1Q9UPV9 953 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 UTP11Q9Y3A2 253 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 ZNF165P49910 485 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 GNGT1P63211 74 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 PKD2Q13563 968 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 SYT10Q6XYQ8 523 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 TRIM47Q96LD4 638 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 VCPKMTQ9H867 229 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 STRN4Q9NRL3 753 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 FAM25AB3EWG3 89 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 FAM25CB3EWG5 89 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 FAM25GB3EWG6 89 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 C9IYK1 514 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 PJA2O43164 708 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 DTNBO60941 627 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 CDKL5O76039 1030 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 THEGLP0DJG4 465 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 CCNCP24863 283 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 VCPP55072 806 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 GJA9P57773 515 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 SSTP61278 116 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 RBBP4Q09028 425 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 WTAPQ15007 396 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 KLHL12Q53G59 568 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 NEK11Q8NG66 645 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 PANK1Q8TE04 598 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 PARNO95453 639 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 POLGP54098 1239 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 NOLC1Q14978 699 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 NUGGCQ68CJ6 796 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 ANKS6Q68DC2 871 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 CAPN12Q6ZSI9 719 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 NEK10Q6ZWH5 1172 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 SCAPERQ9BY12 1400 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 CCDC22O60826 627 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 TRIM27P14373 513 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 PSMA4P25789 261 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 ICA1Q05084 483 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 R3HDM1Q15032 1099 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 C4orf46Q504U0 113 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 CCDC157Q569K6 752 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 ARID3BQ8IVW6 561 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 C12orf50Q8NA57 414 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 KLHL29Q96CT2 875 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 PGBD1Q96JS3 809 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 MYLK2Q9H1R3 596 aa8.32□□□□□ -1.08
LIMCH1-201ENST00000313860 NFIBO00712 420 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 SYNCRIPO60506 623 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 TNFRSF21O75509 655 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 YWHABP31946 246 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 ASPHQ12797 758 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 ASIC2Q16515 512 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 CCDC153Q494R4 210 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 GAL3ST3Q96A11 431 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 NCAPD3P42695 1498 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 K7ELQ4 463 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 RGS16O15492 202 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 SMARCA5O60264 1052 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 C4BPBP20851 252 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 EEF1GP26641 437 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 SERPINB1P30740 379 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 TMEM266Q2M3C6 531 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 ATP13A5Q4VNC0 1218 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 NAALADL2Q58DX5 795 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 CCDC26Q8TAB7 109 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 HSPH1Q92598 858 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 CYTH4Q9UIA0 394 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 ASAP1Q9ULH1 1129 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 C14orf166Q9Y224 244 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 KRT87PA6NCN2 255 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 ENSAO43768 121 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 KRT20P35900 424 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 SESN2P58004 480 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 TEFQ10587 303 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 RIC3Q7Z5B4 369 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 TXNDC2Q86VQ3 553 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 NCLNQ969V3 563 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 MCRS1Q96EZ8 462 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 OTUD5Q96G74 571 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 DNALI1O14645 258 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 E2F6O75461 281 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 SEC24DO94855 1032 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 POTEIP0CG38 1075 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 LAYNQ6UX15 382 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 CHMP1BQ7LBR1 199 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 PATL1Q86TB9 770 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 SESTD1Q86VW0 696 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 RRP36Q96EU6 259 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 XPO4Q9C0E2 1151 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 GTF2A1LQ9UNN4 478 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 TRIM13O60858 407 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms