RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 QRICH1Q2TAL8 776 aa21.05■□□□□ 0.96
HMGA1-201ENST00000311487 OTUD7BQ6GQQ9 843 aa21.05■□□□□ 0.96
HMGA1-201ENST00000311487 NSUN7Q8NE18 718 aaKnown RBP21.05■□□□□ 0.96
HMGA1-201ENST00000311487 GJB4Q9NTQ9 266 aa21.05■□□□□ 0.96
HMGA1-201ENST00000311487 COA7Q96BR5 231 aa21.04■□□□□ 0.96
HMGA1-201ENST00000311487 RNF186Q9NXI6 227 aa21.04■□□□□ 0.96
HMGA1-201ENST00000311487 PNMA3Q9UL41 463 aa21.04■□□□□ 0.96
HMGA1-201ENST00000311487 IFNAR1P17181 557 aa21.04■□□□□ 0.96
HMGA1-201ENST00000311487 SSRP1Q08945 709 aaKnown RBP21.04■□□□□ 0.96
HMGA1-201ENST00000311487 RRP36Q96EU6 259 aaKnown RBP21.04■□□□□ 0.96
HMGA1-201ENST00000311487 PARK7Q99497 189 aaKnown RBP21.04■□□□□ 0.96
HMGA1-201ENST00000311487 SPZ1Q9BXG8 430 aa21.04■□□□□ 0.96
HMGA1-201ENST00000311487 SLC38A10Q9HBR0 1119 aa21.04■□□□□ 0.96
HMGA1-201ENST00000311487 RIPK3Q9Y572 518 aa21.04■□□□□ 0.96
HMGA1-201ENST00000311487 NID2Q14112 1375 aa21.04■□□□□ 0.96
HMGA1-201ENST00000311487 CENPFP49454 3210 aa21.03■□□□□ 0.96
HMGA1-201ENST00000311487 PARP14Q460N5 1801 aa21.03■□□□□ 0.96
HMGA1-201ENST00000311487 ZBED4O75132 1171 aa21.03■□□□□ 0.96
HMGA1-201ENST00000311487 CNMDO75829 334 aa21.03■□□□□ 0.96
HMGA1-201ENST00000311487 FDPSP14324 419 aaKnown RBP21.03■□□□□ 0.96
HMGA1-201ENST00000311487 LZTS2Q9BRK4 669 aa21.03■□□□□ 0.96
HMGA1-201ENST00000311487 COL11A1P12107 1806 aaPredicted RBP21.03■□□□□ 0.96
HMGA1-201ENST00000311487 ZNF536O15090 1300 aa21.03■□□□□ 0.96
HMGA1-201ENST00000311487 ZBTB5O15062 677 aa21.02■□□□□ 0.96
HMGA1-201ENST00000311487 HSP90AA1P07900 732 aaKnown RBP21.02■□□□□ 0.96
HMGA1-201ENST00000311487 HEATR3Q7Z4Q2 680 aa21.02■□□□□ 0.96
HMGA1-201ENST00000311487 RANBP17Q9H2T7 1088 aaKnown RBP21.02■□□□□ 0.96
HMGA1-201ENST00000311487 SEC63Q9UGP8 760 aaKnown RBP21.02■□□□□ 0.96
HMGA1-201ENST00000311487 ADAMTS5Q9UNA0 930 aa21.02■□□□□ 0.96
HMGA1-201ENST00000311487 SLC45A1Q9Y2W3 748 aa21.02■□□□□ 0.96
HMGA1-201ENST00000311487 PLA2G6O60733 806 aa21.02■□□□□ 0.95
HMGA1-201ENST00000311487 PPP2R5BQ15173 497 aa21.02■□□□□ 0.95
HMGA1-201ENST00000311487 PKN1Q16512 942 aa21.02■□□□□ 0.95
HMGA1-201ENST00000311487 SNRNP48Q6IEG0 339 aaKnown RBP21.02■□□□□ 0.95
HMGA1-201ENST00000311487 CPLX2Q6PUV4 134 aaKnown RBP21.02■□□□□ 0.95
HMGA1-201ENST00000311487 LBX2Q6XYB7 198 aa21.02■□□□□ 0.95
HMGA1-201ENST00000311487 REPS2Q8NFH8 660 aa21.02■□□□□ 0.95
HMGA1-201ENST00000311487 ZFYVE28Q9HCC9 887 aa21.02■□□□□ 0.95
HMGA1-201ENST00000311487 ORC3Q9UBD5 711 aaPredicted RBP21.02■□□□□ 0.95
HMGA1-201ENST00000311487 FMNL1O95466 1100 aaPredicted RBP21.01■□□□□ 0.95
HMGA1-201ENST00000311487 ALAS1P13196 640 aa21.01■□□□□ 0.95
HMGA1-201ENST00000311487 AKAP17AQ02040 695 aaKnown RBP21.01■□□□□ 0.95
HMGA1-201ENST00000311487 WDR78Q5VTH9 848 aa21.01■□□□□ 0.95
HMGA1-201ENST00000311487 ZNF214Q9UL59 606 aaPredicted RBP21.01■□□□□ 0.95
HMGA1-201ENST00000311487 CCPG1Q9ULG6 757 aa21.01■□□□□ 0.95
HMGA1-201ENST00000311487 PNMA6FA0A0J9YX94 578 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 CA12O43570 354 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 TRIM22Q8IYM9 498 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 PRPF3O43395 683 aaKnown RBP21■□□□□ 0.95
HMGA1-201ENST00000311487 TLR2O60603 784 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 WWC2Q6AWC2 1192 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 TYW1BQ6NUM6 668 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 SHISA4Q96DD7 197 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 MTMR8Q96EF0 704 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 PORCNQ9H237 461 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 VPS54Q9P1Q0 977 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 PCDHA1Q9Y5I3 950 aa21■□□□□ 0.95
HMGA1-201ENST00000311487 CDKL5O76039 1030 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 GJB2P29033 226 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 STAT3P40763 770 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 ERVK-9P63128 1117 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 ERVK-24P63145 666 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 GUCY1B3Q02153 619 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 CUL4AQ13619 759 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 FBXO11Q86XK2 927 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 SPATC1LQ9H0A9 340 aa20.99■□□□□ 0.95
HMGA1-201ENST00000311487 MUM1L1Q5H9M0 696 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 NCAPG2Q86XI2 1143 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 MOV10L1Q9BXT6 1211 aaKnown RBP20.98■□□□□ 0.95
HMGA1-201ENST00000311487 RNF26Q9BY78 433 aaPredicted RBP20.98■□□□□ 0.95
HMGA1-201ENST00000311487 EFCC1Q9HA90 598 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 SMC3Q9UQE7 1217 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 MYH6P13533 1939 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 ADAMTS3O15072 1205 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 ICAM1P05362 532 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 GPRC5AQ8NFJ5 357 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 TBC1D5Q92609 795 aa20.98■□□□□ 0.95
HMGA1-201ENST00000311487 ALDH1A1P00352 501 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 SCG2P13521 617 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 SMARCA1P28370 1054 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 PFKFB3Q16875 520 aaPredicted RBP20.97■□□□□ 0.95
HMGA1-201ENST00000311487 IL27Q8NEV9 243 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 SMARCC2Q8TAQ2 1214 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 ALG1Q9BT22 464 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 AMNQ9BXJ7 453 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 KCNJ14Q9UNX9 436 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 RABGAP1Q9Y3P9 1069 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 MYPNQ86TC9 1320 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 ADGRA2Q96PE1 1338 aa20.97■□□□□ 0.95
HMGA1-201ENST00000311487 ERCC3P19447 782 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 C17orf99Q6UX52 265 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 TRERF1Q96PN7 1200 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 TEX13BQ9BXU2 312 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 ARHGAP39Q9C0H5 1083 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 NFIBO00712 420 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 DEXIO95424 95 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 GCLCP48506 637 aaPredicted RBP20.96■□□□□ 0.95
HMGA1-201ENST00000311487 NFKBIBQ15653 356 aa20.96■□□□□ 0.95
HMGA1-201ENST00000311487 REM2Q8IYK8 340 aaPredicted RBP20.96■□□□□ 0.95
HMGA1-201ENST00000311487 MB21D1Q8N884 522 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms