RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 NSMCE1Q8WV22 266 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 LZICQ8WZA0 190 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 DHX38Q92620 1227 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 SYNCQ9H7C4 482 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 C8orf4Q9NR00 106 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 STRN3Q13033 797 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 BICD1Q96G01 975 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 KIFC3Q9BVG8 833 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 AS3MTQ9HBK9 375 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 POTEFA5A3E0 1075 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 POTEIP0CG38 1075 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 SLC4A8Q2Y0W8 1093 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 POTEEQ6S8J3 1075 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 MPRIPQ6WCQ1 1025 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.41□□□□□ -1.7
USH2A-201ENST00000307340 PARP4Q9UKK3 1724 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 SOX12O15370 315 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 SLFN12LQ6IEE8 588 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 ATL2Q8NHH9 583 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 ZNF202O95125 648 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 PPP2R5CQ13362 524 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 SYCP2LQ5T4T6 812 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 CYB5RLQ6IPT4 315 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 LEMD3Q9Y2U8 911 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 RTCBQ9Y3I0 505 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 PPP2R5DQ14738 602 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 PDCD2Q16342 344 aaPredicted RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 UBE3BQ7Z3V4 1068 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 STRIP2Q9ULQ0 834 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 MGEA5O60502 916 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 XPCQ01831 940 aaPredicted RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 PDE4CQ08493 712 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 CAMK4Q16566 473 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 MS4A14Q96JA4 679 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 VAMP4O75379 141 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 MRPL50Q8N5N7 158 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 CEP120Q8N960 986 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 RABEP2Q9H5N1 569 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 TXLNGQ9NUQ3 528 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 PARP1P09874 1014 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 MAP3K10Q02779 954 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 DMP1Q13316 513 aaPredicted RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 HADHQ16836 314 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 ANKRD20A3Q5VUR7 823 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 RPS6KC1Q96S38 1066 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 TRIM15Q9C019 465 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.41□□□□□ -1.7
USH2A-201ENST00000307340 AMOTL2Q9Y2J4 779 aa4.41□□□□□ -1.7
USH2A-201ENST00000307340 SP100P23497 879 aaPredicted RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 AP3B2Q13367 1082 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 LRRC8BQ6P9F7 803 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 WDR11Q9BZH6 1224 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 COL15A1P39059 1388 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 SSH3Q8TE77 659 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 CHURC1Q8WUH1 139 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 HAUS7Q99871 368 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 PTPRUQ92729 1446 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 MED7O43513 233 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 STAM2O75886 525 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 LDHAP00338 332 aaKnown RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 USP40Q9NVE5 1235 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 PASKQ96RG2 1323 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 PI4KAP2A4QPH2 592 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 H7C0S8 307 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 GTF2A1P52655 376 aaPredicted RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 ETF1P62495 437 aaKnown RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 TMC6Q7Z403 805 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 PI4KAP1Q8N8J0 262 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 FNBP1Q96RU3 617 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 DNAJC17Q9NVM6 304 aaKnown RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 MAGEB6P1A0A0J9YX57 407 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 TNPO2O14787 897 aaKnown RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 SERPINB2P05120 415 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 PDE6CP51160 858 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 PRUNE1Q86TP1 453 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 TEX12Q9BXU0 123 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 CLSTN2Q9H4D0 955 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 RTN4Q9NQC3 1192 aaKnown RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 A0A1B0GW55 424 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 ELL2O00472 640 aaPredicted RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 DUX4L2P0CJ85 424 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 DUX4L3P0CJ86 424 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 DUX4L4P0CJ87 422 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 DUX4L5P0CJ88 424 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 DUX4L6P0CJ89 424 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 DUX4L7P0CJ90 424 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 PCBP1Q15365 356 aaKnown RBP eCLIP4.4□□□□□ -1.7
USH2A-201ENST00000307340 SDCCAG8Q86SQ7 713 aaPredicted RBP4.4□□□□□ -1.7
USH2A-201ENST00000307340 HPS3Q969F9 1004 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 DUX4Q9UBX2 424 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 CASZ1Q86V15 1759 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 SUN1O94901 812 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 NNTQ13423 1086 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 PAF1Q8N7H5 531 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 SDCCAG3Q96C92 435 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 COPRSQ9NQ92 184 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 DNM3Q9UQ16 869 aa4.4□□□□□ -1.7
USH2A-201ENST00000307340 ADGRB2O60241 1585 aa4.4□□□□□ -1.71
USH2A-201ENST00000307340 PLCB4Q15147 1175 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms