RNA–Protein interactions for RNA: ENST00000304990.8

COL4A3-201, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 3

Gene COL4A3, Length 910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-201ENST00000304990 LCORLQ8N3X6 602 aa12.14□□□□□ -0.47
COL4A3-201ENST00000304990 SSH3Q8TE77 659 aa12.14□□□□□ -0.47
COL4A3-201ENST00000304990 EAF2Q96CJ1 260 aaPredicted RBP12.14□□□□□ -0.47
COL4A3-201ENST00000304990 SLF1Q9BQI6 1058 aa12.14□□□□□ -0.47
COL4A3-201ENST00000304990 BCL11AQ9H165 835 aa12.14□□□□□ -0.47
COL4A3-201ENST00000304990 UPF3AQ9H1J1 476 aaKnown RBP12.14□□□□□ -0.47
COL4A3-201ENST00000304990 C1orf115Q9H7X2 142 aa12.14□□□□□ -0.47
COL4A3-201ENST00000304990 KANSL2Q9H9L4 492 aa12.14□□□□□ -0.47
COL4A3-201ENST00000304990 UMODL1Q5DID0 1318 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 MUC3AQ02505 3323 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 FAM86C2PA6NEL3 165 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 RFXAPO00287 272 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 ZEB2O60315 1214 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 ZBED4O75132 1171 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 CABYRO75952 493 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 CD4P01730 458 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 CDK8P49336 464 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 TNFAIP2Q03169 654 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 ITGA7Q13683 1181 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 ZNF467Q7Z7K2 595 aaPredicted RBP12.13□□□□□ -0.47
COL4A3-201ENST00000304990 ALYREFQ86V81 257 aaKnown RBP12.13□□□□□ -0.47
COL4A3-201ENST00000304990 TRMT2AQ8IZ69 625 aaKnown RBP12.13□□□□□ -0.47
COL4A3-201ENST00000304990 HLA-CQ95604 372 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 DNAJC2Q99543 621 aaKnown RBP12.13□□□□□ -0.47
COL4A3-201ENST00000304990 AP5M1Q9H0R1 490 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 ARMT1Q9H993 441 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 TNNQ9UQP3 1299 aa12.13□□□□□ -0.47
COL4A3-201ENST00000304990 ADCY6O43306 1168 aa12.12□□□□□ -0.47
COL4A3-201ENST00000304990 ARMCX2Q7L311 632 aa12.12□□□□□ -0.47
COL4A3-201ENST00000304990 REPS2Q8NFH8 660 aa12.12□□□□□ -0.47
COL4A3-201ENST00000304990 ARNTL2Q8WYA1 636 aa12.12□□□□□ -0.47
COL4A3-201ENST00000304990 NUP88Q99567 741 aaPredicted RBP12.12□□□□□ -0.47
COL4A3-201ENST00000304990 RIPK3Q9Y572 518 aa12.12□□□□□ -0.47
COL4A3-201ENST00000304990 MTCH2Q9Y6C9 303 aa12.12□□□□□ -0.47
COL4A3-201ENST00000304990 DNAJC25-GNG10A0A024R161 153 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 GOLIM4O00461 696 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 CA3P07451 260 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 ACTN1P12814 892 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 DEFB128Q7Z7B8 93 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 TLK2Q86UE8 772 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 ERC1Q8IUD2 1116 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 CCDC144CPQ8IYA2 1237 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 TMEM57Q8N5G2 664 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 PRPF38AQ8NAV1 312 aaKnown RBP12.11□□□□□ -0.47
COL4A3-201ENST00000304990 KIFC2Q96AC6 838 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 SCLYQ96I15 445 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 NOC4LQ9BVI4 516 aaKnown RBP12.11□□□□□ -0.47
COL4A3-201ENST00000304990 TRPV6Q9H1D0 765 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 RAVER2Q9HCJ3 691 aaKnown RBP12.11□□□□□ -0.47
COL4A3-201ENST00000304990 ATP8A2Q9NTI2 1148 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 FBXO40Q9UH90 709 aa12.11□□□□□ -0.47
COL4A3-201ENST00000304990 ISY1Q9ULR0 285 aaKnown RBP12.11□□□□□ -0.47
COL4A3-201ENST00000304990 NOP58Q9Y2X3 529 aaKnown RBP12.11□□□□□ -0.47
COL4A3-201ENST00000304990 MYH4Q9Y623 1939 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 CYP2D7A0A087X1C5 515 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 KIF28PB7ZC32 967 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 USP17L12C9JPN9 530 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 USP17L21D6R901 530 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 PRKAB2O43741 272 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 TLL1O43897 1013 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 GPR37L1O60883 481 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 MBD4O95243 580 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 PFKMP08237 780 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 FSCN1Q16658 493 aaKnown RBP12.1□□□□□ -0.47
COL4A3-201ENST00000304990 UIMC1Q96RL1 719 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 SEZ6LQ9BYH1 1024 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 WNT8AQ9H1J5 351 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 HOMER2Q9NSB8 354 aa12.1□□□□□ -0.47
COL4A3-201ENST00000304990 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-201ENST00000304990 DYNC1LI2O43237 492 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-201ENST00000304990 B4GALT4O60513 344 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 PSMC6P62333 389 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 TTLL4Q14679 1199 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 CSPP1Q1MSJ5 1256 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 C12orf60Q5U649 245 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 KRT40Q6A162 431 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 C16orf86Q6ZW13 317 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 STK11IPQ8N1F8 1099 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 CHST13Q8NET6 341 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 FTOQ9C0B1 505 aaKnown RBP eCLIP12.09□□□□□ -0.47
COL4A3-201ENST00000304990 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.09□□□□□ -0.47
COL4A3-201ENST00000304990 IL1RAPL2Q9NP60 686 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 EXOC6BQ9Y2D4 811 aa12.09□□□□□ -0.47
COL4A3-201ENST00000304990 COL4A4P53420 1690 aaPredicted RBP12.09□□□□□ -0.47
COL4A3-201ENST00000304990 SCN5AQ14524 2016 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 MYH7P12883 1935 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 F5H6K3 240 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 SMIM22K7EJ46 135 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 CTAGE5O15320 804 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 SUPT20HL2P0C7V6 817 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 POU3F3P20264 500 aaPredicted RBP12.08□□□□□ -0.48
COL4A3-201ENST00000304990 KLRC3Q07444 240 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 ZKSCAN2Q63HK3 967 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 FTSJ3Q8IY81 847 aaKnown RBP12.08□□□□□ -0.48
COL4A3-201ENST00000304990 SLC43A3Q8NBI5 491 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 SLC9A7Q96T83 725 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 MKNK2Q9HBH9 465 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 SLC4A4Q9Y6R1 1079 aa12.08□□□□□ -0.48
COL4A3-201ENST00000304990 NCOR1O75376 2440 aa12.07□□□□□ -0.48
COL4A3-201ENST00000304990 TCRBV5S4A2TA0A5A2 114 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms