RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 ZMYND12Q9H0C1 365 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 MYH15Q9Y2K3 1946 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 ZBTB7AO95365 584 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 CCT6AP40227 531 aaKnown RBP12.99□□□□□ -0.33
CUX1-202ENST00000292538 ARMCX5Q6P1M9 558 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 CSRNP1Q96S65 589 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 MTRQ99707 1265 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 PI4KBQ9UBF8 816 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 GDAQ9Y2T3 454 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 YDJCA8MPS7 323 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 TDP2O95551 362 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 SARSP49591 514 aaKnown RBP12.99□□□□□ -0.33
CUX1-202ENST00000292538 ADCY7P51828 1080 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 STYK1Q6J9G0 422 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 MIGA2Q7L4E1 593 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 SH3BP5LQ7L8J4 393 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 NEK8Q86SG6 692 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 FAM177A1Q8N128 213 aaPredicted RBP12.99□□□□□ -0.33
CUX1-202ENST00000292538 JMJD4Q9H9V9 463 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.99□□□□□ -0.33
CUX1-202ENST00000292538 SWAP70Q9UH65 585 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 ATF5Q9Y2D1 282 aaPredicted RBP12.99□□□□□ -0.33
CUX1-202ENST00000292538 USP17L15C9J2P7 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L13C9JLJ4 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L11C9JVI0 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L18D6R9N7 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L22D6RA61 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L17D6RBQ6 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L19D6RCP7 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L20D6RJB6 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 GH2P01242 217 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 ADKP55263 362 aaKnown RBP12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L24Q0WX57 530 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 DPYDQ12882 1025 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 USP17L6PQ6QN14 398 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 C4orf32Q8N8J7 132 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 MED15Q96RN5 788 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 CAMKK2Q96RR4 588 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 TMX1Q9H3N1 280 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 ICA1Q05084 483 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 ZNF543Q08ER8 600 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 KRT25Q7Z3Z0 450 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 SPTLC3Q9NUV7 552 aa12.98□□□□□ -0.33
CUX1-202ENST00000292538 CBFA2T2O43439 604 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 OR52Z1P0C646 297 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 DPEP1P16444 411 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 LONP1P36776 959 aaKnown RBP12.97□□□□□ -0.33
CUX1-202ENST00000292538 ASPRV1Q53RT3 343 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 SLFN13Q68D06 897 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 TTLL6Q8N841 843 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 DISC1Q9NRI5 854 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 M0R2N6 131 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 GSDMDP57764 484 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 CCZ1BP86790 482 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 CCZ1P86791 482 aaPredicted RBP12.97□□□□□ -0.33
CUX1-202ENST00000292538 CABP7Q86V35 215 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 OGFOD1Q8N543 542 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 SYNRGQ9UMZ2 1314 aa12.97□□□□□ -0.33
CUX1-202ENST00000292538 PPP1R11O60927 126 aaPredicted RBP12.96□□□□□ -0.33
CUX1-202ENST00000292538 RPN1P04843 607 aaKnown RBP12.96□□□□□ -0.33
CUX1-202ENST00000292538 SSBP05455 408 aaKnown RBP eCLIP12.96□□□□□ -0.33
CUX1-202ENST00000292538 PLCG1P19174 1290 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 ERCC3P19447 782 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 ABCB5Q2M3G0 1257 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 HPS3Q969F9 1004 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 RIOX1Q9H6W3 641 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 PSTPIP2Q9H939 334 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 POTEMA6NI47 508 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 PSMD14O00487 310 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 TEX33O43247 280 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 SLC37A4O43826 429 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 E2F4Q16254 413 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 CALCRLQ16602 461 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 ARL6IP4Q66PJ3 421 aaKnown RBP12.96□□□□□ -0.33
CUX1-202ENST00000292538 PDXDC2PQ6P474 469 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 CCDC84Q86UT8 332 aaPredicted RBP12.96□□□□□ -0.33
CUX1-202ENST00000292538 GSDMAQ96QA5 445 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 PCDHA1Q9Y5I3 950 aa12.96□□□□□ -0.33
CUX1-202ENST00000292538 ECM29Q5VYK3 1845 aa12.96□□□□□ -0.34
CUX1-202ENST00000292538 MYH6P13533 1939 aa12.96□□□□□ -0.34
CUX1-202ENST00000292538 KIAA1551Q9HCM1 1747 aa12.96□□□□□ -0.34
CUX1-202ENST00000292538 NRDCO43847 1150 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 IGSF3O75054 1194 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 NT5DC1Q5TFE4 455 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 GALNT17Q6IS24 598 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 CDAN1Q8IWY9 1227 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 CDK5RAP3Q96JB5 506 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 VPS16Q9H269 839 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.95□□□□□ -0.346e-7■■■■■ 48.9
CUX1-202ENST00000292538 TMOD2Q9NZR1 351 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 PNMA6FA0A0J9YX94 578 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 TRIM49BA6NDI0 452 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 JAG1P78504 1218 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 PTPN14Q15678 1187 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 DYMQ7RTS9 669 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 ENOX1Q8TC92 643 aaKnown RBP12.95□□□□□ -0.34
CUX1-202ENST00000292538 INTS13Q9NVM9 706 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 F5H6K3 240 aa12.95□□□□□ -0.34
CUX1-202ENST00000292538 RIOK3O14730 519 aaKnown RBP12.95□□□□□ -0.34
CUX1-202ENST00000292538 TPM2P07951 284 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms