RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 LARGE1O95461 756 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 ATP2B4P23634 1241 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 IL6STP40189 918 aaPredicted RBP11.84□□□□□ -0.51
CD44-201ENST00000263398 POLR2FP61218 127 aaKnown RBP11.84□□□□□ -0.51
CD44-201ENST00000263398 GNGT1P63211 74 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 FAM98CQ17RN3 349 aaKnown RBP11.84□□□□□ -0.51
CD44-201ENST00000263398 PRR16Q569H4 304 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 PPP1R21Q6ZMI0 780 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 RETREG2Q8NC44 543 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 ENOX1Q8TC92 643 aaKnown RBP11.84□□□□□ -0.51
CD44-201ENST00000263398 HOMER3Q9NSC5 361 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 H0YIN7 160 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 GOLGA8HP0CJ92 632 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 ADAM9Q13443 819 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 CACNA2D3Q8IZS8 1091 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 SUPT20HQ8NEM7 779 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 OSBP2Q969R2 916 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 FTOQ9C0B1 505 aaKnown RBP eCLIP11.84□□□□□ -0.51
CD44-201ENST00000263398 ALDH1B1P30837 517 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 CYP2J2P51589 502 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 SLC35F6Q8N357 371 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 LARGE2Q8N3Y3 721 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 DHTKD1Q96HY7 919 aaPredicted RBP11.84□□□□□ -0.51
CD44-201ENST00000263398 AK8Q96MA6 479 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 CFAP74Q9C0B2 1584 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 NOP56O00567 594 aaKnown RBP11.83□□□□□ -0.52
CD44-201ENST00000263398 N4BP1O75113 896 aaKnown RBP11.83□□□□□ -0.52
CD44-201ENST00000263398 RNF40O75150 1001 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 IRX5P78411 483 aaPredicted RBP11.83□□□□□ -0.52
CD44-201ENST00000263398 NLRX1Q86UT6 975 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 FAM178BQ8IXR5 827 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 HOOK2Q96ED9 719 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 CNOT6LQ96LI5 555 aaKnown RBP11.83□□□□□ -0.52
CD44-201ENST00000263398 PPANQ9NQ55 473 aaKnown RBP11.83□□□□□ -0.52
CD44-201ENST00000263398 E9PCH4 1651 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 BUB1O43683 1085 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 TNNI1P19237 187 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 HSPA1LP34931 641 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 PCK1P35558 622 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 APBA1Q02410 837 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 MIER3Q7Z3K6 550 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 BCAS4Q8TDM0 211 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 VTI1AQ96AJ9 217 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 PLEKHA4Q9H4M7 779 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 PHLPP2Q6ZVD8 1323 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 PLEKHG1Q9ULL1 1385 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 M0R2C6 588 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 LIFRP42702 1097 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 ARHGAP24Q8N264 748 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 MCUR1Q96AQ8 359 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 DDX25Q9UHL0 483 aaKnown RBP11.83□□□□□ -0.52
CD44-201ENST00000263398 SHROOM2Q13796 1616 aa11.83□□□□□ -0.52
CD44-201ENST00000263398 MMP1P03956 469 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 DLGAP5Q15398 846 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 OTUD6AQ7L8S5 288 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 LMNTD2Q8IXW0 634 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 ANKRD13CQ8N6S4 541 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 EEF2KMTQ96G04 330 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 AZI2Q9H6S1 392 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 HGSO14964 777 aaPredicted RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 STK10O94804 968 aaKnown RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 FOSP01100 380 aaPredicted RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 PDE6BP35913 854 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 ITIH3Q06033 890 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 CCDC62Q6P9F0 684 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 LRRC47Q8N1G4 583 aaKnown RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 TTC16Q8NEE8 873 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 RNF17Q9BXT8 1623 aaKnown RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 PRAMEF22A3QJZ6 481 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 MYL1P05976 194 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 FBXO11Q86XK2 927 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 SPATS2Q86XZ4 545 aaKnown RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 CAPS2Q9BXY5 557 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 BZW2Q9Y6E2 419 aaKnown RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 FRMPD2Q68DX3 1309 aaPredicted RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 MAP3K4Q9Y6R4 1608 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 SH2B2O14492 632 aaPredicted RBP11.82□□□□□ -0.52
CD44-201ENST00000263398 BTDP43251 543 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 SMC1BQ8NDV3 1235 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 CARD10Q9BWT7 1032 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 ASAP1Q9ULH1 1129 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 ZNF804BA4D1E1 1349 aa11.82□□□□□ -0.52
CD44-201ENST00000263398 LOC102724428A0A0B4J2F2 783 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 STX2P32856 288 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 ZNF131P52739 623 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 SIK1P57059 783 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 PPARDQ03181 441 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 RASA3Q14644 834 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 ANKRD20A3Q5VUR7 823 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 P3H4Q92791 437 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 PDE11AQ9HCR9 933 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 CLEC11AQ9Y240 323 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 ZBTB1Q9Y2K1 713 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 A0A087WWV3 80 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 CCDC151A5D8V7 595 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 BUB1BO60566 1050 aaPredicted RBP11.81□□□□□ -0.52
CD44-201ENST00000263398 NR5A1Q13285 461 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 EXOC3L4Q17RC7 722 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 GPATCH4Q5T3I0 446 aaKnown RBP11.81□□□□□ -0.52
CD44-201ENST00000263398 LARP4BQ92615 738 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms