RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 CCDC194A0A1B0GVG4 234 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 MAGEA13PA6NCF6 341 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 ASIC1P78348 528 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 CCDC84Q86UT8 332 aaPredicted RBP14.11□□□□□ -0.15
VAMP4-201ENST00000236192 TMEM165Q9HC07 324 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 UBN2Q6ZU65 1347 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 ADGRF5Q8IZF2 1346 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 DCTN3O75935 186 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 KRT40Q6A162 431 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 PLPPR3Q6T4P5 718 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 CRELD2Q6UXH1 353 aaPredicted RBP14.11□□□□□ -0.15
VAMP4-201ENST00000236192 ARHGEF18Q6ZSZ5 1173 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 PEX26Q7Z412 305 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 C17orf50Q8WW18 174 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 TEX13AQ9BXU3 409 aaPredicted RBP14.11□□□□□ -0.15
VAMP4-201ENST00000236192 ATP1A1P05023 1023 aaKnown RBP14.11□□□□□ -0.15
VAMP4-201ENST00000236192 CXCR5P32302 372 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 MTF1Q14872 753 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 NUGGCQ68CJ6 796 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 OLFML1Q6UWY5 402 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 DPF2Q92785 391 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 GGA2Q9UJY4 613 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 VIRMAQ69YN4 1812 aaKnown RBP14.11□□□□□ -0.15
VAMP4-201ENST00000236192 ITIH3Q06033 890 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 NSUN7Q8NE18 718 aaKnown RBP14.11□□□□□ -0.15
VAMP4-201ENST00000236192 JPH4Q96JJ6 628 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 IWS1Q96ST2 819 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 ATP8A1Q9Y2Q0 1164 aa14.11□□□□□ -0.15
VAMP4-201ENST00000236192 SEMA3EO15041 775 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 NQO1P15559 274 aaKnown RBP14.1□□□□□ -0.15
VAMP4-201ENST00000236192 YY1P25490 414 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 GCLCP48506 637 aaPredicted RBP14.1□□□□□ -0.15
VAMP4-201ENST00000236192 RTN1Q16799 776 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 RETREG2Q8NC44 543 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 SNRNP27Q8WVK2 155 aaKnown RBP14.1□□□□□ -0.15
VAMP4-201ENST00000236192 PHACTR3Q96KR7 559 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 RUNDC3BQ96NL0 473 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 ZIM3Q96PE6 472 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 RIMS2Q9UQ26 1411 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 VPS41P49754 854 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 KAT2BQ92831 832 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.1□□□□□ -0.15
VAMP4-201ENST00000236192 SASH1O94885 1247 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 SERPINB3P29508 390 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 RAB34Q9BZG1 259 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 NAPBQ9H115 298 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 LRWD1Q9UFC0 647 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 MAPK8IP1Q9UQF2 711 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 MAP3K5Q99683 1374 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 KRT2P35908 639 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 ARL10Q8N8L6 244 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 PUS7Q96PZ0 661 aaKnown RBP14.1□□□□□ -0.15
VAMP4-201ENST00000236192 DRC3Q9H069 523 aa14.1□□□□□ -0.15
VAMP4-201ENST00000236192 PI4KAP2A4QPH2 592 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 PHF20L1A8MW92 1017 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 MOCS3O95396 460 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 PHBP35232 272 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 SKOR1P84550 965 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 VPS37DQ86XT2 251 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 PI4KAP1Q8N8J0 262 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 TBC1D5Q92609 795 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 NHEJ1Q9H9Q4 299 aaPredicted RBP14.09□□□□□ -0.15
VAMP4-201ENST00000236192 KDM6BO15054 1643 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 ZFYVE9O95405 1425 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 YEATS2Q9ULM3 1422 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 GNAT2P19087 354 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 MRPS25P82663 173 aaKnown RBP14.09□□□□□ -0.15
VAMP4-201ENST00000236192 TRPC3Q13507 836 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 RAPGEF1Q13905 1077 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 ASIC2Q16515 512 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 TTLL7Q6ZT98 887 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.09□□□□□ -0.15
VAMP4-201ENST00000236192 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.09□□□□□ -0.15
VAMP4-201ENST00000236192 CLMNQ96JQ2 1002 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 LRRC1Q9BTT6 524 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 C2CD2Q9Y426 696 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 AK9Q5TCS8 1911 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 IGF2BP3O00425 579 aaKnown RBP eCLIP14.09□□□□□ -0.15
VAMP4-201ENST00000236192 E2F6O75461 281 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 ACADSP16219 412 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 SFMBT2Q5VUG0 894 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 RRAGAQ7L523 313 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 TC2NQ8N9U0 490 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 NEK9Q8TD19 979 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 CABP5Q9NP86 173 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 KDRP35968 1356 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 KDM5AP29375 1690 aaKnown RBP14.09□□□□□ -0.15
VAMP4-201ENST00000236192 WDR7Q9Y4E6 1490 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 DKC1O60832 514 aaKnown RBP eCLIP14.09□□□□□ -0.15
VAMP4-201ENST00000236192 STRN3Q13033 797 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 ZNF449Q6P9G9 518 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 CLIC6Q96NY7 704 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 BCAP29Q9UHQ4 241 aa14.09□□□□□ -0.15
VAMP4-201ENST00000236192 RTN3O95197 1032 aaPredicted RBP14.08□□□□□ -0.16
VAMP4-201ENST00000236192 SNX1Q13596 522 aa14.08□□□□□ -0.16
VAMP4-201ENST00000236192 PLEKHO1Q53GL0 409 aaPredicted RBP14.08□□□□□ -0.16
VAMP4-201ENST00000236192 AGGF1Q8N302 714 aaeCLIP14.08□□□□□ -0.16
VAMP4-201ENST00000236192 ZNF518AQ6AHZ1 1483 aa14.08□□□□□ -0.16
VAMP4-201ENST00000236192 ARHGAP42A6NI28 874 aa14.08□□□□□ -0.16
VAMP4-201ENST00000236192 SYF2O95926 243 aaKnown RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms