RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Cul5Q9D5V5 780 aa9.91□□□□□ -0.82
Trim39-201ENSMUST00000042717 Rsph10bE9PYQ0 876 aa9.9□□□□□ -0.82
Trim39-201ENSMUST00000042717 LdhbP16125 334 aaKnown RBP9.9□□□□□ -0.82
Trim39-201ENSMUST00000042717 Nr5a1P33242 462 aa9.9□□□□□ -0.82
Trim39-201ENSMUST00000042717 Zfp51Q3U4L8 781 aa9.9□□□□□ -0.82
Trim39-201ENSMUST00000042717 Mettl5Q8K1A0 209 aa9.9□□□□□ -0.82
Trim39-201ENSMUST00000042717 Rrp9Q91WM3 475 aaKnown RBP9.9□□□□□ -0.82
Trim39-201ENSMUST00000042717 SisF8VQM5 1818 aa9.9□□□□□ -0.82
Trim39-201ENSMUST00000042717 Flot1O08917 428 aa9.9□□□□□ -0.83
Trim39-201ENSMUST00000042717 Ptger2Q62053 362 aa9.9□□□□□ -0.83
Trim39-201ENSMUST00000042717 Fbxo10Q7TQF2 950 aa9.9□□□□□ -0.83
Trim39-201ENSMUST00000042717 Depdc1aQ8CIG0 804 aa9.9□□□□□ -0.83
Trim39-201ENSMUST00000042717 Saal1Q9D2C2 474 aa9.9□□□□□ -0.83
Trim39-201ENSMUST00000042717 Arhgap4B1AUY3 965 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 ThbdP15306 577 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Usp25P57080 1055 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Tmem109Q3UBX0 243 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Rgl1Q60695 768 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Tll1Q62381 1013 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Peg10Q7TN75 958 aaKnown RBP9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Cnksr2Q80YA9 1032 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Bbs9Q811G0 885 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Spata21Q8BHW6 681 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Olfml1Q8BSH2 233 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Gprasp2Q8BUY8 826 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Epc2Q8C0I4 808 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 MslnlQ8C160 685 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Hs2st1Q8R3H7 356 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 BaatQ91X34 420 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Myh7bA2AQP0 1941 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Gcnt1Q09324 428 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Arhgef16Q3U5C8 713 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Cdca8Q8BHX3 289 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Plcg2Q8CIH5 1265 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Usp33Q8R5K2 909 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Ubxn4Q8VCH8 506 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Lmbr1Q9JIT0 490 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Ccnt1Q9QWV9 724 aaKnown RBP9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 Large1Q9Z1M7 756 aa9.89□□□□□ -0.83
Trim39-201ENSMUST00000042717 AoahO35298 574 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Mmp10O55123 476 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Aco1P28271 889 aaKnown RBP9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Ripply1Q2WG77 201 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Znf219Q6IQX8 726 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Fez1Q8K0X8 392 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Mical1Q8VDP3 1048 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Stxbp4Q9WV89 557 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Zfp853A0A1D5RM95 733 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Lrrc32G3XA59 663 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Slc10a4Q3UEZ8 437 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Tshz1Q5DTH5 1084 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Sun3Q5SS91 320 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Bri3bpQ8BXV2 253 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Vmn1r199Q8R280 367 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Pspc1Q8R326 523 aaKnown RBP9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Aldh1b1Q9CZS1 519 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Polr2aP08775 1970 aaKnown RBP9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Gm5134E9QAB5 671 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Atp2b1G5E829 1220 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Usp17ldG5E8G2 545 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Usp17lcG5E8I7 545 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Rrp1P56183 494 aaKnown RBP9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 LpxnQ99N69 386 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Cmtm5Q9D6G9 156 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Sertad1Q9JL10 236 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Plagl1Q9JLQ4 704 aa9.88□□□□□ -0.83
Trim39-201ENSMUST00000042717 Tpm3-rs7D3Z2H9 248 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Oog1E9Q5G7 496 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Mmp14P53690 582 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Trappc10Q3TLI0 1259 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Ppp2r5dQ91V89 594 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Igf2bp3Q9CPN8 579 aaKnown RBP9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Sapcd2Q9D818 391 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 ArcQ9WV31 396 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Col2a1P28481 1487 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 AU015836B2RUM3 263 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Parp1P11103 1013 aaKnown RBP9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 EporP14753 507 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Plekha7Q3UIL6 1118 aaKnown RBP9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Stxbp3Q60770 592 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Ccdc172Q810N9 267 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 GlyctkQ8QZY2 523 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 SrrtQ99MR6 875 aaKnown RBP9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Calml3Q9D6P8 149 aa9.87□□□□□ -0.83
Trim39-201ENSMUST00000042717 Nf2P46662 596 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Eepd1Q3TGW2 569 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Tmem130Q6NXM3 419 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Pgrmc2Q80UU9 217 aaKnown RBP9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Spon1Q8VCC9 807 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Atp5c1Q91VR2 298 aaKnown RBP9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Bhmt2Q91WS4 363 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 HlcsQ920N2 722 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Tjp3Q9QXY1 905 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Add3Q9QYB5 706 aaKnown RBP9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Frmpd4A2AFR3 1320 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 XdhQ00519 1335 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Otud5Q3U2S4 566 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Lrrc36Q3V0M2 755 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Sv2cQ69ZS6 727 aa9.86□□□□□ -0.83
Trim39-201ENSMUST00000042717 Gpbp1Q6NXH3 473 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 22,080 RNA–protein pairs in 26.7 ms