RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 MASTLQ96GX5 879 aa24.41■■□□□ 1.5
CLN6-224ENST00000638076 TMX4Q9H1E5 349 aaPredicted RBP24.41■■□□□ 1.5
CLN6-224ENST00000638076 USP40Q9NVE5 1235 aa24.41■■□□□ 1.5
CLN6-224ENST00000638076 USP17L5A8MUK1 530 aa24.41■■□□□ 1.5
CLN6-224ENST00000638076 G3V3G9 751 aa24.41■■□□□ 1.5
CLN6-224ENST00000638076 DCAF8Q5TAQ9 597 aa24.41■■□□□ 1.5
CLN6-224ENST00000638076 VAT1LQ9HCJ6 419 aa24.41■■□□□ 1.5
CLN6-224ENST00000638076 CD44P16070 742 aaKnown RBP24.4■■□□□ 1.5
CLN6-224ENST00000638076 CDC25AP30304 524 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 CT47A1Q5JQC4 288 aaPredicted RBP24.4■■□□□ 1.5
CLN6-224ENST00000638076 CCDC12Q8WUD4 166 aaPredicted RBP24.4■■□□□ 1.5
CLN6-224ENST00000638076 KCND1Q9NSA2 647 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 SAMSN1Q9NSI8 373 aaKnown RBP24.4■■□□□ 1.5
CLN6-224ENST00000638076 MTMR4Q9NYA4 1195 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 SEC63Q9UGP8 760 aaKnown RBP24.4■■□□□ 1.5
CLN6-224ENST00000638076 PLIN4Q96Q06 1357 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 NRDCO43847 1150 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 KLHL10Q6JEL2 608 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 FLAD1Q8NFF5 587 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 BLZF1Q9H2G9 400 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 TMEM60Q9H2L4 133 aa24.4■■□□□ 1.5
CLN6-224ENST00000638076 AKR1B1P15121 316 aa24.39■■□□□ 1.5
CLN6-224ENST00000638076 SMARCA1P28370 1054 aa24.39■■□□□ 1.5
CLN6-224ENST00000638076 MSL1Q68DK7 614 aa24.39■■□□□ 1.5
CLN6-224ENST00000638076 DTHD1Q6ZMT9 781 aa24.39■■□□□ 1.5
CLN6-224ENST00000638076 SMYD4Q8IYR2 804 aaPredicted RBP24.39■■□□□ 1.5
CLN6-224ENST00000638076 PIGSQ96S52 555 aa24.39■■□□□ 1.5
CLN6-224ENST00000638076 MTRQ99707 1265 aa24.39■■□□□ 1.5
CLN6-224ENST00000638076 SMCO2A6NFE2 343 aa24.39■■□□□ 1.49
CLN6-224ENST00000638076 TXLNAP40222 546 aa24.39■■□□□ 1.49
CLN6-224ENST00000638076 NYAP1Q6ZVC0 841 aa24.39■■□□□ 1.49
CLN6-224ENST00000638076 TSC1Q92574 1164 aa24.39■■□□□ 1.49
CLN6-224ENST00000638076 ZNF622Q969S3 477 aaKnown RBP eCLIP24.39■■□□□ 1.49
CLN6-224ENST00000638076 UBA5Q9GZZ9 404 aa24.39■■□□□ 1.49
CLN6-224ENST00000638076 PDHBP11177 359 aa24.38■■□□□ 1.49
CLN6-224ENST00000638076 CUL4BQ13620 913 aa24.38■■□□□ 1.49
CLN6-224ENST00000638076 PTPN14Q15678 1187 aa24.38■■□□□ 1.49
CLN6-224ENST00000638076 CEP135Q66GS9 1140 aa24.38■■□□□ 1.49
CLN6-224ENST00000638076 E4F1Q66K89 784 aaPredicted RBP24.38■■□□□ 1.49
CLN6-224ENST00000638076 SERPINB13Q9UIV8 391 aa24.38■■□□□ 1.49
CLN6-224ENST00000638076 COL11A2P13942 1736 aaPredicted RBP24.38■■□□□ 1.49
CLN6-224ENST00000638076 QSER1Q2KHR3 1735 aa24.38■■□□□ 1.49
CLN6-224ENST00000638076 EIF6P56537 245 aaKnown RBP24.38■■□□□ 1.49
CLN6-224ENST00000638076 C6orf50Q9HD87 102 aa24.38■■□□□ 1.49
CLN6-224ENST00000638076 FRMPD2Q68DX3 1309 aaPredicted RBP24.37■■□□□ 1.49
CLN6-224ENST00000638076 GNA11P29992 359 aa24.37■■□□□ 1.49
CLN6-224ENST00000638076 STX17P56962 302 aa24.37■■□□□ 1.49
CLN6-224ENST00000638076 KARSQ15046 597 aaKnown RBP24.37■■□□□ 1.49
CLN6-224ENST00000638076 CDC42EP5Q6NZY7 148 aa24.37■■□□□ 1.49
CLN6-224ENST00000638076 LRRC47Q8N1G4 583 aaKnown RBP24.37■■□□□ 1.49
CLN6-224ENST00000638076 TEKT1Q969V4 418 aa24.37■■□□□ 1.49
CLN6-224ENST00000638076 SYNRGQ9UMZ2 1314 aa24.37■■□□□ 1.49
CLN6-224ENST00000638076 PPP1R3GB7ZBB8 358 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 GTPBP6O43824 516 aaPredicted RBP24.36■■□□□ 1.49
CLN6-224ENST00000638076 HSP90AA2PQ14568 343 aaPredicted RBP24.36■■□□□ 1.49
CLN6-224ENST00000638076 SPATA1Q5VX52 437 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 HHIPL2Q6UWX4 724 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 KRT25Q7Z3Z0 450 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 CLEC10AQ8IUN9 316 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 RIOX1Q9H6W3 641 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 DBNDD1Q9H9R9 158 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 PAXBP1Q9Y5B6 917 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 IGKV6D-41A0A0C4DH26 115 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 SOGA3Q5TF21 947 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 APOBEC3HQ6NTF7 200 aaKnown RBP24.36■■□□□ 1.49
CLN6-224ENST00000638076 ZNF592Q92610 1267 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 DISC1Q9NRI5 854 aa24.36■■□□□ 1.49
CLN6-224ENST00000638076 RRP9O43818 475 aaKnown RBP24.35■■□□□ 1.49
CLN6-224ENST00000638076 STAT6P42226 847 aa24.35■■□□□ 1.49
CLN6-224ENST00000638076 KCNJ6P48051 423 aa24.35■■□□□ 1.49
CLN6-224ENST00000638076 KCNQ5Q9NR82 932 aa24.35■■□□□ 1.49
CLN6-224ENST00000638076 SWAP70Q9UH65 585 aa24.35■■□□□ 1.49
CLN6-224ENST00000638076 PP2D1A8MPX8 630 aa24.35■■□□□ 1.49
CLN6-224ENST00000638076 LAD1O00515 517 aa24.35■■□□□ 1.49
CLN6-224ENST00000638076 GOLGA8FQ08AF8 430 aa24.35■■□□□ 1.49
CLN6-224ENST00000638076 GOLGA8DPQ0D2H9 430 aa24.35■■□□□ 1.49
CLN6-224ENST00000638076 NONOQ15233 471 aaKnown RBP eCLIP24.35■■□□□ 1.491e-6■■■□□ 16.1
CLN6-224ENST00000638076 TTLL1O95922 423 aa24.34■■□□□ 1.49
CLN6-224ENST00000638076 LETM2Q2VYF4 491 aa24.34■■□□□ 1.49
CLN6-224ENST00000638076 ASPRV1Q53RT3 343 aa24.34■■□□□ 1.49
CLN6-224ENST00000638076 PODNQ7Z5L7 613 aa24.34■■□□□ 1.49
CLN6-224ENST00000638076 CCDC112Q8NEF3 446 aa24.34■■□□□ 1.49
CLN6-224ENST00000638076 ADAMTSL1Q8N6G6 1762 aa24.34■■□□□ 1.49
CLN6-224ENST00000638076 SHMT1P34896 483 aa24.33■■□□□ 1.49
CLN6-224ENST00000638076 PRPHP41219 470 aa24.33■■□□□ 1.49
CLN6-224ENST00000638076 ZNF772Q68DY9 489 aaPredicted RBP24.33■■□□□ 1.49
CLN6-224ENST00000638076 C2CD5Q86YS7 1000 aa24.33■■□□□ 1.49
CLN6-224ENST00000638076 RASSF8Q8NHQ8 419 aa24.33■■□□□ 1.49
CLN6-224ENST00000638076 TMX1Q9H3N1 280 aa24.33■■□□□ 1.49
CLN6-224ENST00000638076 PSDA5PKW4 1024 aaPredicted RBP24.33■■□□□ 1.48
CLN6-224ENST00000638076 CCNT1O60563 726 aaKnown RBP24.33■■□□□ 1.48
CLN6-224ENST00000638076 SNHG28P0DPA3 235 aa24.33■■□□□ 1.48
CLN6-224ENST00000638076 UBA7P41226 1012 aa24.33■■□□□ 1.48
CLN6-224ENST00000638076 CRKP46108 304 aa24.33■■□□□ 1.48
CLN6-224ENST00000638076 NFIAQ12857 509 aa24.33■■□□□ 1.48
CLN6-224ENST00000638076 TBX2Q13207 712 aaPredicted RBP24.33■■□□□ 1.48
CLN6-224ENST00000638076 NR1I3Q14994 352 aa24.33■■□□□ 1.48
CLN6-224ENST00000638076 RRAGBQ5VZM2 374 aa24.33■■□□□ 1.48
CLN6-224ENST00000638076 SPECC1LQ69YQ0 1117 aa24.33■■□□□ 1.48
CLN6-224ENST00000638076 CTNND2Q9UQB3 1225 aa24.33■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms