RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 MPHOSPH10O00566 681 aaKnown RBP19.82■□□□□ 0.76
CLN3-264ENST00000637985 SNAI1O95863 264 aaPredicted RBP19.82■□□□□ 0.76
CLN3-264ENST00000637985 CD4P01730 458 aa19.82■□□□□ 0.76
CLN3-264ENST00000637985 GNAI2P04899 355 aa19.82■□□□□ 0.76
CLN3-264ENST00000637985 ASGR1P07306 291 aa19.82■□□□□ 0.76
CLN3-264ENST00000637985 IRX5P78411 483 aaPredicted RBP19.82■□□□□ 0.76
CLN3-264ENST00000637985 SIAH1Q8IUQ4 282 aa19.82■□□□□ 0.76
CLN3-264ENST00000637985 SPICE1Q8N0Z3 855 aa19.82■□□□□ 0.76
CLN3-264ENST00000637985 PCSK9Q8NBP7 692 aaKnown RBP19.82■□□□□ 0.76
CLN3-264ENST00000637985 KHSRPQ92945 711 aaKnown RBP eCLIP19.82■□□□□ 0.76
CLN3-264ENST00000637985 PCDHA11Q9Y5I1 949 aa19.82■□□□□ 0.76
CLN3-264ENST00000637985 MTCH2Q9Y6C9 303 aa19.82■□□□□ 0.76
CLN3-264ENST00000637985 TLR3O15455 904 aaKnown RBP19.81■□□□□ 0.76
CLN3-264ENST00000637985 MYOGP15173 224 aa19.81■□□□□ 0.76
CLN3-264ENST00000637985 TNNI3KQ59H18 835 aa19.81■□□□□ 0.76
CLN3-264ENST00000637985 OTOP2Q7RTS6 562 aa19.81■□□□□ 0.76
CLN3-264ENST00000637985 CLUAP1Q96AJ1 413 aa19.81■□□□□ 0.76
CLN3-264ENST00000637985 VTI1AQ96AJ9 217 aa19.81■□□□□ 0.76
CLN3-264ENST00000637985 COG5Q9UP83 839 aa19.81■□□□□ 0.76
CLN3-264ENST00000637985 TMX2Q9Y320 296 aa19.81■□□□□ 0.76
CLN3-264ENST00000637985 FPGT-TNNI3KV9GXZ4 949 aa19.81■□□□□ 0.76
CLN3-264ENST00000637985 ZBED9Q6R2W3 1325 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 LRRC37A2A6NM11 1700 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 PNMA6EA0A0J9YXQ4 647 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 IDH1O75874 414 aaKnown RBP19.8■□□□□ 0.76
CLN3-264ENST00000637985 POLR3DP05423 398 aaPredicted RBP19.8■□□□□ 0.76
CLN3-264ENST00000637985 C6orf222P0C671 652 aaPredicted RBP19.8■□□□□ 0.76
CLN3-264ENST00000637985 STAT3P40763 770 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 MAMDC4Q6UXC1 1216 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 TMEM179Q6ZVK1 233 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 MAGEB6Q8N7X4 407 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 VCPKMTQ9H867 229 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 TNNQ9UQP3 1299 aa19.8■□□□□ 0.76
CLN3-264ENST00000637985 FAM86C2PA6NEL3 165 aa19.79■□□□□ 0.76
CLN3-264ENST00000637985 WDR46O15213 610 aaKnown RBP19.79■□□□□ 0.76
CLN3-264ENST00000637985 EVX2Q03828 476 aa19.79■□□□□ 0.76
CLN3-264ENST00000637985 SAMD1Q6SPF0 538 aaPredicted RBP19.79■□□□□ 0.76
CLN3-264ENST00000637985 UPF3AQ9H1J1 476 aaKnown RBP19.79■□□□□ 0.76
CLN3-264ENST00000637985 ZHX1Q9UKY1 873 aaPredicted RBP19.79■□□□□ 0.76
CLN3-264ENST00000637985 ZNF214Q9UL59 606 aaPredicted RBP19.79■□□□□ 0.76
CLN3-264ENST00000637985 SLC4A7Q9Y6M7 1214 aa19.79■□□□□ 0.76
CLN3-264ENST00000637985 PI4K2BG5E9Z4 385 aa19.78■□□□□ 0.76
CLN3-264ENST00000637985 ADCY6O43306 1168 aa19.78■□□□□ 0.76
CLN3-264ENST00000637985 COPB2P35606 906 aa19.78■□□□□ 0.76
CLN3-264ENST00000637985 GJA9P57773 515 aa19.78■□□□□ 0.76
CLN3-264ENST00000637985 TMEM57Q8N5G2 664 aa19.78■□□□□ 0.76
CLN3-264ENST00000637985 RIOK1Q9BRS2 568 aaKnown RBP19.78■□□□□ 0.76
CLN3-264ENST00000637985 HIPK3Q9H422 1215 aa19.78■□□□□ 0.76
CLN3-264ENST00000637985 ARHGEF10LQ9HCE6 1279 aa19.78■□□□□ 0.76
CLN3-264ENST00000637985 UMODL1Q5DID0 1318 aa19.77■□□□□ 0.76
CLN3-264ENST00000637985 RFXAPO00287 272 aa19.77■□□□□ 0.76
CLN3-264ENST00000637985 VWA5AO00534 786 aa19.77■□□□□ 0.76
CLN3-264ENST00000637985 GTPBP6O43824 516 aaPredicted RBP19.77■□□□□ 0.76
CLN3-264ENST00000637985 GNASQ5JWF2 1037 aa19.77■□□□□ 0.76
CLN3-264ENST00000637985 TMED8Q6PL24 325 aaPredicted RBP19.77■□□□□ 0.76
CLN3-264ENST00000637985 CLEC10AQ8IUN9 316 aa19.77■□□□□ 0.76
CLN3-264ENST00000637985 REPS2Q8NFH8 660 aa19.77■□□□□ 0.76
CLN3-264ENST00000637985 SPC25Q9HBM1 224 aa19.77■□□□□ 0.76
CLN3-264ENST00000637985 FBXO28Q9NVF7 368 aa19.77■□□□□ 0.76
CLN3-264ENST00000637985 DNAJC25-GNG10A0A024R161 153 aa19.76■□□□□ 0.75
CLN3-264ENST00000637985 CTAGE5O15320 804 aa19.76■□□□□ 0.75
CLN3-264ENST00000637985 NKX3-2P78367 333 aa19.76■□□□□ 0.75
CLN3-264ENST00000637985 ACVR2BQ13705 512 aa19.76■□□□□ 0.75
CLN3-264ENST00000637985 SLC43A3Q8NBI5 491 aa19.76■□□□□ 0.75
CLN3-264ENST00000637985 VWCEQ96DN2 955 aa19.76■□□□□ 0.75
CLN3-264ENST00000637985 SNX27Q96L92 541 aa19.76■□□□□ 0.75
CLN3-264ENST00000637985 SH2D4AQ9H788 454 aa19.76■□□□□ 0.75
CLN3-264ENST00000637985 SMIM22K7EJ46 135 aa19.75■□□□□ 0.75
CLN3-264ENST00000637985 ICA1Q05084 483 aa19.75■□□□□ 0.75
CLN3-264ENST00000637985 ZNF467Q7Z7K2 595 aaPredicted RBP19.75■□□□□ 0.75
CLN3-264ENST00000637985 FTSJ3Q8IY81 847 aaKnown RBP19.75■□□□□ 0.75
CLN3-264ENST00000637985 HLA-CQ95604 372 aa19.75■□□□□ 0.75
CLN3-264ENST00000637985 MCM9Q9NXL9 1143 aa19.75■□□□□ 0.75
CLN3-264ENST00000637985 DBNLQ9UJU6 430 aaKnown RBP19.75■□□□□ 0.75
CLN3-264ENST00000637985 PPP1R9AQ9ULJ8 1098 aa19.75■□□□□ 0.75
CLN3-264ENST00000637985 NAV1Q8NEY1 1877 aa19.75■□□□□ 0.75
CLN3-264ENST00000637985 ATP2A2P16615 1042 aaKnown RBP19.74■□□□□ 0.75
CLN3-264ENST00000637985 CCL23P55773 120 aa19.74■□□□□ 0.75
CLN3-264ENST00000637985 CCDC144BQ3MJ40 725 aa19.74■□□□□ 0.75
CLN3-264ENST00000637985 KRT40Q6A162 431 aa19.74■□□□□ 0.75
CLN3-264ENST00000637985 RPUSD2Q8IZ73 545 aaKnown RBP19.74■□□□□ 0.75
CLN3-264ENST00000637985 NOC4LQ9BVI4 516 aaKnown RBP19.74■□□□□ 0.75
CLN3-264ENST00000637985 WNT8AQ9H1J5 351 aa19.74■□□□□ 0.75
CLN3-264ENST00000637985 ABHD16BQ9H3Z7 469 aa19.74■□□□□ 0.75
CLN3-264ENST00000637985 CD320Q9NPF0 282 aa19.74■□□□□ 0.75
CLN3-264ENST00000637985 EPOPA6NHQ4 379 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 PRR33A8MZF0 331 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 CA3P07451 260 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 AKR1B1P15121 316 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 MRE11P49959 708 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 TMEM67Q5HYA8 995 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 DDX11Q96FC9 970 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 ANTXR1Q9H6X2 564 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.73■□□□□ 0.75
CLN3-264ENST00000637985 SWAP70Q9UH65 585 aa19.73■□□□□ 0.75
CLN3-264ENST00000637985 MCM3APO60318 1980 aa19.72■□□□□ 0.75
CLN3-264ENST00000637985 CERS4Q9HA82 394 aa19.72■□□□□ 0.75
CLN3-264ENST00000637985 BRWD1Q9NSI6 2320 aa19.72■□□□□ 0.75
CLN3-264ENST00000637985 TLR7Q9NYK1 1049 aaKnown RBP19.72■□□□□ 0.75
CLN3-264ENST00000637985 MAGEB6P1A0A0J9YX57 407 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms