RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZKSCAN1P17029 563 aaPredicted RBP21.44■■□□□ 1.02
CLN3-259ENST00000637551 SEC23AQ15436 765 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 CREB3L3Q68CJ9 461 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 GPR142Q7Z601 462 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 PLEKHH3Q7Z736 793 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 MB21D2Q8IYB1 491 aaPredicted RBP21.44■■□□□ 1.02
CLN3-259ENST00000637551 RAET1EQ8TD07 263 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 KCNB2Q92953 911 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 NUDT12Q9BQG2 462 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 KAT14Q9H8E8 782 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 GJD2Q9UKL4 321 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 IVNS1ABPQ9Y6Y0 642 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 SLC15A5A6NIM6 579 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 RAD21O60216 631 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 ZBED4O75132 1171 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 HOXC6P09630 235 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 PRKCZQ05513 592 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 Q3C1V9 767 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 SLC9C1Q4G0N8 1177 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 TMTC2Q8N394 836 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 PNMA1Q8ND90 353 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 USP6NLQ92738 828 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 TMEM87BQ96K49 555 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 MOV10L1Q9BXT6 1211 aaKnown RBP21.43■■□□□ 1.02
CLN3-259ENST00000637551 MAF1Q9H063 256 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 PORCNQ9H237 461 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 FBXO28Q9NVF7 368 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 PTCH2Q9Y6C5 1203 aa21.43■■□□□ 1.02
CLN3-259ENST00000637551 HMGB1P09429 215 aaKnown RBP21.42■■□□□ 1.02
CLN3-259ENST00000637551 MCCP23508 829 aa21.42■■□□□ 1.02
CLN3-259ENST00000637551 MCM5P33992 734 aa21.42■■□□□ 1.02
CLN3-259ENST00000637551 FLT3LGP49771 235 aa21.42■■□□□ 1.02
CLN3-259ENST00000637551 ZNF543Q08ER8 600 aa21.42■■□□□ 1.02
CLN3-259ENST00000637551 GRB14Q14449 540 aa21.42■■□□□ 1.02
CLN3-259ENST00000637551 TMEM132BQ14DG7 1078 aa21.42■■□□□ 1.02
CLN3-259ENST00000637551 ASPRV1Q53RT3 343 aa21.42■■□□□ 1.02
CLN3-259ENST00000637551 MORN1Q5T089 497 aa21.42■■□□□ 1.02
CLN3-259ENST00000637551 IFIT1BQ5T764 474 aaKnown RBP21.42■■□□□ 1.02
CLN3-259ENST00000637551 NUP88Q99567 741 aaPredicted RBP21.42■■□□□ 1.02
CLN3-259ENST00000637551 COLQQ9Y215 455 aaPredicted RBP21.42■■□□□ 1.02
CLN3-259ENST00000637551 TMEM232C9JQI7 657 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 GRK4P32298 578 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 STAT3P40763 770 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 RGS2P41220 211 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 TKFCQ3LXA3 575 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 STOX1Q6ZVD7 989 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 ZNF333Q96JL9 665 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 MAP3K14Q99558 947 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 APBA2Q99767 749 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 FBXO40Q9UH90 709 aa21.41■■□□□ 1.02
CLN3-259ENST00000637551 EN2P19622 333 aaPredicted RBP21.4■■□□□ 1.02
CLN3-259ENST00000637551 PTPREP23469 700 aa21.4■■□□□ 1.02
CLN3-259ENST00000637551 SLC5A4Q9NY91 659 aa21.4■■□□□ 1.02
CLN3-259ENST00000637551 ERCC3P19447 782 aa21.39■■□□□ 1.01
CLN3-259ENST00000637551 HSPA4P34932 840 aa21.39■■□□□ 1.01
CLN3-259ENST00000637551 LIFRP42702 1097 aa21.39■■□□□ 1.01
CLN3-259ENST00000637551 MAP2K5Q13163 448 aa21.39■■□□□ 1.01
CLN3-259ENST00000637551 CCDC96Q2M329 555 aa21.39■■□□□ 1.01
CLN3-259ENST00000637551 CYB5R4Q7L1T6 521 aa21.39■■□□□ 1.01
CLN3-259ENST00000637551 CHST13Q8NET6 341 aa21.39■■□□□ 1.01
CLN3-259ENST00000637551 NKX2-3Q8TAU0 364 aa21.39■■□□□ 1.01
CLN3-259ENST00000637551 CWC22Q9HCG8 908 aaKnown RBP21.39■■□□□ 1.01
CLN3-259ENST00000637551 CTDP1Q9Y5B0 961 aaPredicted RBP21.39■■□□□ 1.01
CLN3-259ENST00000637551 TRIOBPQ9H2D6 2365 aa21.38■■□□□ 1.01
CLN3-259ENST00000637551 ZNFX1Q9P2E3 1918 aaKnown RBP21.38■■□□□ 1.01
CLN3-259ENST00000637551 IFIT3O14879 490 aaKnown RBP21.38■■□□□ 1.01
CLN3-259ENST00000637551 ADCY3O60266 1144 aa21.38■■□□□ 1.01
CLN3-259ENST00000637551 HMGCRP04035 888 aa21.38■■□□□ 1.01
CLN3-259ENST00000637551 UBXN2AP68543 259 aa21.38■■□□□ 1.01
CLN3-259ENST00000637551 WTAPQ15007 396 aa21.38■■□□□ 1.01
CLN3-259ENST00000637551 KIFC2Q96AC6 838 aa21.38■■□□□ 1.01
CLN3-259ENST00000637551 ZKSCAN3Q9BRR0 538 aa21.38■■□□□ 1.01
CLN3-259ENST00000637551 RANBP17Q9H2T7 1088 aaKnown RBP21.38■■□□□ 1.01
CLN3-259ENST00000637551 GABRQQ9UN88 632 aa21.38■■□□□ 1.01
CLN3-259ENST00000637551 DIS3Q9Y2L1 958 aaKnown RBP21.38■■□□□ 1.01
CLN3-259ENST00000637551 FCER1AP12319 257 aa21.37■■□□□ 1.01
CLN3-259ENST00000637551 IKQ13123 557 aaPredicted RBP21.37■■□□□ 1.01
CLN3-259ENST00000637551 SYDE2Q5VT97 1194 aa21.37■■□□□ 1.01
CLN3-259ENST00000637551 KCTD1Q719H9 257 aa21.37■■□□□ 1.01
CLN3-259ENST00000637551 IGDCC4Q8TDY8 1250 aa21.37■■□□□ 1.01
CLN3-259ENST00000637551 PRR12Q9ULL5 1215 aa21.37■■□□□ 1.01
CLN3-259ENST00000637551 TAF6LQ9Y6J9 622 aa21.37■■□□□ 1.01
CLN3-259ENST00000637551 CEP290O15078 2479 aa21.37■■□□□ 1.01
CLN3-259ENST00000637551 DDAH1O94760 285 aa21.36■■□□□ 1.01
CLN3-259ENST00000637551 ICAM1P05362 532 aa21.36■■□□□ 1.01
CLN3-259ENST00000637551 PARP1P09874 1014 aaKnown RBP21.36■■□□□ 1.01
CLN3-259ENST00000637551 RCAN1P53805 252 aa21.36■■□□□ 1.01
CLN3-259ENST00000637551 ANTXR2P58335 489 aa21.36■■□□□ 1.01
CLN3-259ENST00000637551 PLS1Q14651 629 aa21.36■■□□□ 1.01
CLN3-259ENST00000637551 SNRNP48Q6IEG0 339 aaKnown RBP21.36■■□□□ 1.01
CLN3-259ENST00000637551 SGMS1Q86VZ5 419 aa21.36■■□□□ 1.01
CLN3-259ENST00000637551 FBXL16Q8N461 479 aa21.36■■□□□ 1.01
CLN3-259ENST00000637551 NEK1Q96PY6 1258 aa21.36■■□□□ 1.01
CLN3-259ENST00000637551 TMEM67Q5HYA8 995 aa21.35■■□□□ 1.01
CLN3-259ENST00000637551 OLFML2BQ68BL8 750 aa21.35■■□□□ 1.01
CLN3-259ENST00000637551 NCAPG2Q86XI2 1143 aa21.35■■□□□ 1.01
CLN3-259ENST00000637551 MSL3Q8N5Y2 521 aaKnown RBP21.35■■□□□ 1.01
CLN3-259ENST00000637551 PLXNA1Q9UIW2 1896 aa21.35■■□□□ 1.01
CLN3-259ENST00000637551 ZNF536O15090 1300 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 MYH6P13533 1939 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms