RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 GNAT2P19087 354 aa21.36■■□□□ 1.01
CIITA-215ENST00000637439 SMAD3P84022 425 aaKnown RBP21.36■■□□□ 1.01
CIITA-215ENST00000637439 C9orf50Q5SZB4 431 aa21.36■■□□□ 1.01
CIITA-215ENST00000637439 SH3RF1Q7Z6J0 888 aa21.36■■□□□ 1.01
CIITA-215ENST00000637439 CTDP1Q9Y5B0 961 aaPredicted RBP21.36■■□□□ 1.01
CIITA-215ENST00000637439 A0A1W2PQ45 241 aaPredicted RBP21.35■■□□□ 1.01
CIITA-215ENST00000637439 A0A1W2PQY0 241 aa21.35■■□□□ 1.01
CIITA-215ENST00000637439 ATP2A1O14983 1001 aa21.35■■□□□ 1.01
CIITA-215ENST00000637439 RNF113AO15541 343 aaKnown RBP21.35■■□□□ 1.01
CIITA-215ENST00000637439 ZBED4O75132 1171 aa21.35■■□□□ 1.01
CIITA-215ENST00000637439 NDUFB10O96000 172 aa21.35■■□□□ 1.01
CIITA-215ENST00000637439 LRRFIP1Q32MZ4 808 aaKnown RBP21.35■■□□□ 1.01
CIITA-215ENST00000637439 ZNF444Q8N0Y2 327 aaPredicted RBP21.35■■□□□ 1.01
CIITA-215ENST00000637439 NUP88Q99567 741 aaPredicted RBP21.35■■□□□ 1.01
CIITA-215ENST00000637439 FAM184BQ9ULE4 1060 aa21.35■■□□□ 1.01
CIITA-215ENST00000637439 SYNPO2Q9UMS6 1093 aa21.35■■□□□ 1.01
CIITA-215ENST00000637439 UNC80Q8N2C7 3258 aa21.34■■□□□ 1.01
CIITA-215ENST00000637439 KIAA0355O15063 1070 aa21.34■■□□□ 1.01
CIITA-215ENST00000637439 MAMDC4Q6UXC1 1216 aa21.34■■□□□ 1.01
CIITA-215ENST00000637439 ZNF467Q7Z7K2 595 aaPredicted RBP21.34■■□□□ 1.01
CIITA-215ENST00000637439 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.34■■□□□ 1.01
CIITA-215ENST00000637439 STK11IPQ8N1F8 1099 aa21.34■■□□□ 1.01
CIITA-215ENST00000637439 NUP133Q8WUM0 1156 aa21.34■■□□□ 1.01
CIITA-215ENST00000637439 OSBP2Q969R2 916 aa21.34■■□□□ 1.01
CIITA-215ENST00000637439 CLIP2Q9UDT6 1046 aa21.34■■□□□ 1.01
CIITA-215ENST00000637439 DNAJC25-GNG10A0A024R161 153 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 MOXD2PA6NHM9 499 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 ADAMTS4O75173 837 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 RAG1P15918 1043 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 TDO2P48775 406 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 MKL1Q969V6 931 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 TOX2Q96NM4 488 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 FBXO40Q9UH90 709 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 FEM1BQ9UK73 627 aa21.33■■□□□ 1.01
CIITA-215ENST00000637439 MYH4Q9Y623 1939 aa21.32■■□□□ 1
CIITA-215ENST00000637439 IGKV6D-41A0A0C4DH26 115 aa21.32■■□□□ 1
CIITA-215ENST00000637439 GPAA1O43292 621 aa21.32■■□□□ 1
CIITA-215ENST00000637439 PQBP1O60828 265 aaKnown RBP21.32■■□□□ 1
CIITA-215ENST00000637439 ACLYP53396 1101 aa21.32■■□□□ 1
CIITA-215ENST00000637439 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.32■■□□□ 1
CIITA-215ENST00000637439 ANKRD33Q7Z3H0 272 aa21.32■■□□□ 1
CIITA-215ENST00000637439 SEMA6BQ9H3T3 888 aa21.32■■□□□ 1
CIITA-215ENST00000637439 DCTPP1Q9H773 170 aa21.32■■□□□ 1
CIITA-215ENST00000637439 STARD7Q9NQZ5 370 aa21.32■■□□□ 1
CIITA-215ENST00000637439 RIPK3Q9Y572 518 aa21.32■■□□□ 1
CIITA-215ENST00000637439 SYNRGQ9UMZ2 1314 aa21.31■■□□□ 1
CIITA-215ENST00000637439 DCDC2CA8MYV0 355 aa21.31■■□□□ 1
CIITA-215ENST00000637439 DUSP11O75319 330 aaKnown RBP21.31■■□□□ 1
CIITA-215ENST00000637439 SNAI1O95863 264 aaPredicted RBP21.31■■□□□ 1
CIITA-215ENST00000637439 APPP05067 770 aa21.31■■□□□ 1
CIITA-215ENST00000637439 OAZ1P54368 228 aa21.31■■□□□ 1
CIITA-215ENST00000637439 C20orf194Q5TEA3 1177 aa21.31■■□□□ 1
CIITA-215ENST00000637439 CPXCR1Q8N123 301 aa21.31■■□□□ 1
CIITA-215ENST00000637439 KIFC2Q96AC6 838 aa21.31■■□□□ 1
CIITA-215ENST00000637439 CDX2Q99626 313 aaPredicted RBP21.31■■□□□ 1
CIITA-215ENST00000637439 NACAP1Q9BZK3 213 aa21.31■■□□□ 1
CIITA-215ENST00000637439 SLC38A10Q9HBR0 1119 aa21.31■■□□□ 1
CIITA-215ENST00000637439 TMEM39AQ9NV64 488 aa21.31■■□□□ 1
CIITA-215ENST00000637439 MTMR4Q9NYA4 1195 aa21.31■■□□□ 1
CIITA-215ENST00000637439 ZHX1Q9UKY1 873 aaPredicted RBP21.31■■□□□ 1
CIITA-215ENST00000637439 TMEM265A0A087WTH1 108 aa21.3■■□□□ 1
CIITA-215ENST00000637439 PATL2C9JE40 543 aaKnown RBP21.3■■□□□ 1
CIITA-215ENST00000637439 TTLL1O95922 423 aa21.3■■□□□ 1
CIITA-215ENST00000637439 FDX1P10109 184 aa21.3■■□□□ 1
CIITA-215ENST00000637439 SLC4A3P48751 1232 aa21.3■■□□□ 1
CIITA-215ENST00000637439 FPGSQ05932 587 aa21.3■■□□□ 1
CIITA-215ENST00000637439 ANKRD35Q8N283 1001 aa21.3■■□□□ 1
CIITA-215ENST00000637439 GMCL1P1Q8NEA9 526 aa21.3■■□□□ 1
CIITA-215ENST00000637439 KLHDC9Q8NEP7 349 aa21.3■■□□□ 1
CIITA-215ENST00000637439 CHST13Q8NET6 341 aa21.3■■□□□ 1
CIITA-215ENST00000637439 LENG1Q96BZ8 264 aaPredicted RBP21.3■■□□□ 1
CIITA-215ENST00000637439 CEP95Q96GE4 821 aa21.3■■□□□ 1
CIITA-215ENST00000637439 RNPC3Q96LT9 517 aaKnown RBP21.3■■□□□ 1
CIITA-215ENST00000637439 SPC25Q9HBM1 224 aa21.3■■□□□ 1
CIITA-215ENST00000637439 EPB41L4AQ9HCS5 686 aaPredicted RBP21.3■■□□□ 1
CIITA-215ENST00000637439 MROH7Q68CQ1 1323 aa21.29■■□□□ 1
CIITA-215ENST00000637439 ITGB8P26012 769 aa21.29■■□□□ 1
CIITA-215ENST00000637439 PDE4BQ07343 736 aa21.29■■□□□ 1
CIITA-215ENST00000637439 ACVR2BQ13705 512 aa21.29■■□□□ 1
CIITA-215ENST00000637439 KCNA10Q16322 511 aa21.29■■□□□ 1
CIITA-215ENST00000637439 PCSK9Q8NBP7 692 aaKnown RBP21.29■■□□□ 1
CIITA-215ENST00000637439 ABHD16BQ9H3Z7 469 aa21.29■■□□□ 1
CIITA-215ENST00000637439 RAVER2Q9HCJ3 691 aaKnown RBP21.29■■□□□ 1
CIITA-215ENST00000637439 PRDM1O75626 825 aa21.28■■□□□ 1
CIITA-215ENST00000637439 SLC3A2P08195 630 aaKnown RBP21.28■■□□□ 1
CIITA-215ENST00000637439 CST5P28325 142 aaPredicted RBP21.28■■□□□ 1
CIITA-215ENST00000637439 FAAP100Q0VG06 881 aa21.28■■□□□ 1
CIITA-215ENST00000637439 CCSAPQ6IQ19 270 aaPredicted RBP21.28■■□□□ 1
CIITA-215ENST00000637439 IFNL3Q8IZI9 196 aa21.28■■□□□ 1
CIITA-215ENST00000637439 GLT1D1Q96MS3 346 aa21.28■■□□□ 1
CIITA-215ENST00000637439 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.28■■□□□ 1
CIITA-215ENST00000637439 ELP1O95163 1332 aa21.28■■□□□ 1
CIITA-215ENST00000637439 PLIN4Q96Q06 1357 aa21.27■■□□□ 1
CIITA-215ENST00000637439 M0R2C6 588 aa21.27■■□□□ 1
CIITA-215ENST00000637439 ERC2O15083 957 aa21.27■■□□□ 1
CIITA-215ENST00000637439 TSPY3P0CV98 308 aa21.27■■□□□ 1
CIITA-215ENST00000637439 TSPY8P0CW00 308 aa21.27■■□□□ 1
CIITA-215ENST00000637439 BMP3P12645 472 aa21.27■■□□□ 1
CIITA-215ENST00000637439 TSHZ3Q63HK5 1081 aa21.27■■□□□ 1
CIITA-215ENST00000637439 NEDD1Q8NHV4 660 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms