RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 CCND3P30281 292 aaPredicted RBP17.52■□□□□ 0.4
LINC00643-206ENST00000623985 STAT3P40763 770 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 NOVP48745 357 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 STAT2P52630 851 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 STAG1Q8WVM7 1258 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 TOMM22Q9NS69 142 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 OGDHLQ9ULD0 1010 aa17.52■□□□□ 0.4
LINC00643-206ENST00000623985 NMT2O60551 498 aa17.51■□□□□ 0.39
LINC00643-206ENST00000623985 HAND2P61296 217 aa17.51■□□□□ 0.39
LINC00643-206ENST00000623985 RRP12Q5JTH9 1297 aaKnown RBP17.51■□□□□ 0.39
LINC00643-206ENST00000623985 AKNAD1Q5T1N1 836 aa17.51■□□□□ 0.39
LINC00643-206ENST00000623985 SNRNP48Q6IEG0 339 aaKnown RBP17.51■□□□□ 0.39
LINC00643-206ENST00000623985 MMP19Q99542 508 aa17.51■□□□□ 0.39
LINC00643-206ENST00000623985 NBPF3Q9H094 633 aa17.51■□□□□ 0.39
LINC00643-206ENST00000623985 RNF41Q9H4P4 317 aaPredicted RBP17.51■□□□□ 0.39
LINC00643-206ENST00000623985 SLC38A10Q9HBR0 1119 aa17.51■□□□□ 0.39
LINC00643-206ENST00000623985 RAD50Q92878 1312 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 MSCO60682 206 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 COBLO75128 1261 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 ZBED4O75132 1171 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 FDX1P10109 184 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 SLC1A4P43007 532 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 NT5C2P49902 561 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 OAZ1P54368 228 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 KCTD2Q14681 263 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 MFSD6Q6ZSS7 791 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 NECAB2Q7Z6G3 386 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 FAM160B2Q86V87 743 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 TBC1D10CQ8IV04 446 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 KIFC2Q96AC6 838 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 DSCC1Q9BVC3 393 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 TCP11L1Q9NUJ3 509 aa17.5■□□□□ 0.39
LINC00643-206ENST00000623985 CTDP1Q9Y5B0 961 aaPredicted RBP17.5■□□□□ 0.39
LINC00643-206ENST00000623985 PLA2G6O60733 806 aa17.49■□□□□ 0.39
LINC00643-206ENST00000623985 CYBAP13498 195 aa17.49■□□□□ 0.39
LINC00643-206ENST00000623985 CYP2C19P33261 490 aa17.49■□□□□ 0.39
LINC00643-206ENST00000623985 DIS3LQ8TF46 1054 aaKnown RBP17.49■□□□□ 0.39
LINC00643-206ENST00000623985 PAWRQ96IZ0 340 aaKnown RBP17.49■□□□□ 0.39
LINC00643-206ENST00000623985 MAML3Q96JK9 1138 aa17.49■□□□□ 0.39
LINC00643-206ENST00000623985 ISY1Q9ULR0 285 aaKnown RBP17.49■□□□□ 0.39
LINC00643-206ENST00000623985 LTBP2Q14767 1821 aa17.49■□□□□ 0.39
LINC00643-206ENST00000623985 NEDD4P46934 1319 aa17.48■□□□□ 0.39
LINC00643-206ENST00000623985 TMEM232C9JQI7 657 aa17.48■□□□□ 0.39
LINC00643-206ENST00000623985 ZNF213O14771 459 aa17.48■□□□□ 0.39
LINC00643-206ENST00000623985 MNX1P50219 401 aaPredicted RBP17.48■□□□□ 0.39
LINC00643-206ENST00000623985 LHX8Q68G74 356 aa17.48■□□□□ 0.39
LINC00643-206ENST00000623985 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.48■□□□□ 0.39
LINC00643-206ENST00000623985 CHURC1Q8WUH1 139 aa17.48■□□□□ 0.39
LINC00643-206ENST00000623985 DCAF4Q8WV16 495 aa17.48■□□□□ 0.39
LINC00643-206ENST00000623985 DPF3Q92784 378 aa17.48■□□□□ 0.39
LINC00643-206ENST00000623985 DDX20Q9UHI6 824 aaKnown RBP17.48■□□□□ 0.39
LINC00643-206ENST00000623985 DIS3Q9Y2L1 958 aaKnown RBP17.48■□□□□ 0.39
LINC00643-206ENST00000623985 MCCP23508 829 aa17.47■□□□□ 0.39
LINC00643-206ENST00000623985 IKQ13123 557 aaPredicted RBP17.47■□□□□ 0.39
LINC00643-206ENST00000623985 CPXCR1Q8N123 301 aa17.47■□□□□ 0.39
LINC00643-206ENST00000623985 ESR2Q92731 530 aa17.47■□□□□ 0.39
LINC00643-206ENST00000623985 RAVER2Q9HCJ3 691 aaKnown RBP17.47■□□□□ 0.39
LINC00643-206ENST00000623985 PGK2P07205 417 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 TOP1P11387 765 aaKnown RBP17.46■□□□□ 0.39
LINC00643-206ENST00000623985 CNGA1P29973 690 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 IMMTQ16891 758 aaKnown RBP17.46■□□□□ 0.39
LINC00643-206ENST00000623985 ZNF792Q3KQV3 632 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 RCSD1Q6JBY9 416 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 KCTD1Q719H9 257 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 RASGRP2Q7LDG7 609 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 TRPV1Q8NER1 839 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 RUFY2Q8WXA3 655 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 IL25Q9H293 177 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 C11orf49Q9H6J7 331 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 FBXO40Q9UH90 709 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 CTNNA3Q9UI47 895 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 RIPK3Q9Y572 518 aa17.46■□□□□ 0.39
LINC00643-206ENST00000623985 RANBP2P49792 3224 aaKnown RBP17.46■□□□□ 0.39
LINC00643-206ENST00000623985 H0YGN5 161 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 CCDC96Q2M329 555 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 CHST13Q8NET6 341 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 TTC14Q96N46 770 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 TMEM47Q9BQJ4 181 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 NRBP1Q9UHY1 535 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 NR2E3Q9Y5X4 410 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 KIAA1217Q5T5P2 1943 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 PFASO15067 1338 aa17.45■□□□□ 0.38
LINC00643-206ENST00000623985 DNAJC25-GNG10A0A024R161 153 aa17.44■□□□□ 0.38
LINC00643-206ENST00000623985 SEPT4O43236 478 aa17.44■□□□□ 0.38
LINC00643-206ENST00000623985 EVI5O60447 810 aa17.44■□□□□ 0.38
LINC00643-206ENST00000623985 MSL3Q8N5Y2 521 aaKnown RBP17.44■□□□□ 0.38
LINC00643-206ENST00000623985 TINF2Q9BSI4 451 aa17.44■□□□□ 0.38
LINC00643-206ENST00000623985 PRR12Q9ULL5 1215 aa17.44■□□□□ 0.38
LINC00643-206ENST00000623985 MTMR7Q9Y216 660 aa17.44■□□□□ 0.38
LINC00643-206ENST00000623985 ZNF536O15090 1300 aa17.44■□□□□ 0.38
LINC00643-206ENST00000623985 PDHBP11177 359 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 COL6A1P12109 1028 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 CHMLP26374 656 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 SLC4A3P48751 1232 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 TKFCQ3LXA3 575 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 IQCA1Q86XH1 822 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 CHMP4CQ96CF2 233 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 DDX11Q96FC9 970 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 ACAD9Q9H845 621 aa17.43■□□□□ 0.38
LINC00643-206ENST00000623985 CNNM2Q9H8M5 875 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms