RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 SNRNP48Q6IEG0 339 aaKnown RBP28.42■■■□□ 2.14
CPSF1-214ENST00000622776 PRPF38AQ8NAV1 312 aaKnown RBP28.42■■■□□ 2.14
CPSF1-214ENST00000622776 FAM161BQ96MY7 647 aa28.42■■■□□ 2.14
CPSF1-214ENST00000622776 EPB41L4AQ9HCS5 686 aaPredicted RBP28.42■■■□□ 2.14
CPSF1-214ENST00000622776 CLIP2Q9UDT6 1046 aa28.42■■■□□ 2.14
CPSF1-214ENST00000622776 RIPK3Q9Y572 518 aa28.42■■■□□ 2.14
CPSF1-214ENST00000622776 IGKV6D-41A0A0C4DH26 115 aa28.41■■■□□ 2.14
CPSF1-214ENST00000622776 ZNF697Q5TEC3 545 aa28.41■■■□□ 2.14
CPSF1-214ENST00000622776 MSL3Q8N5Y2 521 aaKnown RBP28.41■■■□□ 2.14
CPSF1-214ENST00000622776 LENG1Q96BZ8 264 aaPredicted RBP28.41■■■□□ 2.14
CPSF1-214ENST00000622776 DDX11Q96FC9 970 aa28.41■■■□□ 2.14
CPSF1-214ENST00000622776 TACC3Q9Y6A5 838 aa28.41■■■□□ 2.14
CPSF1-214ENST00000622776 GNAT2P19087 354 aa28.4■■■□□ 2.14
CPSF1-214ENST00000622776 TDO2P48775 406 aa28.4■■■□□ 2.14
CPSF1-214ENST00000622776 ZNF444Q8N0Y2 327 aaPredicted RBP28.4■■■□□ 2.14
CPSF1-214ENST00000622776 DNAJC25-GNG10A0A024R161 153 aa28.39■■■□□ 2.14
CPSF1-214ENST00000622776 ATP2A1O14983 1001 aa28.39■■■□□ 2.14
CPSF1-214ENST00000622776 CPXCR1Q8N123 301 aa28.39■■■□□ 2.14
CPSF1-214ENST00000622776 MKL1Q969V6 931 aa28.39■■■□□ 2.14
CPSF1-214ENST00000622776 ZNF287Q9HBT7 754 aa28.39■■■□□ 2.14
CPSF1-214ENST00000622776 A0A1W2PQ45 241 aaPredicted RBP28.38■■■□□ 2.13
CPSF1-214ENST00000622776 A0A1W2PQY0 241 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 M0R2C6 588 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 ZBED4O75132 1171 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 ADAMTS4O75173 837 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 PRDM1O75626 825 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 SNAI1O95863 264 aaPredicted RBP28.38■■■□□ 2.13
CPSF1-214ENST00000622776 APPP05067 770 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 CLTBP09497 229 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 SLC4A3P48751 1232 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 TSEN34Q9BSV6 310 aaKnown RBP28.38■■■□□ 2.13
CPSF1-214ENST00000622776 CTDP1Q9Y5B0 961 aaPredicted RBP28.38■■■□□ 2.13
CPSF1-214ENST00000622776 SYNGAP1Q96PV0 1343 aa28.38■■■□□ 2.13
CPSF1-214ENST00000622776 ITGB8P26012 769 aa28.37■■■□□ 2.13
CPSF1-214ENST00000622776 MAMDC4Q6UXC1 1216 aa28.37■■■□□ 2.13
CPSF1-214ENST00000622776 KIFC2Q96AC6 838 aa28.37■■■□□ 2.13
CPSF1-214ENST00000622776 CEP95Q96GE4 821 aa28.37■■■□□ 2.13
CPSF1-214ENST00000622776 MTMR4Q9NYA4 1195 aa28.37■■■□□ 2.13
CPSF1-214ENST00000622776 FAM184BQ9ULE4 1060 aa28.37■■■□□ 2.13
CPSF1-214ENST00000622776 PATL2C9JE40 543 aaKnown RBP28.36■■■□□ 2.13
CPSF1-214ENST00000622776 PQBP1O60828 265 aaKnown RBP28.36■■■□□ 2.13
CPSF1-214ENST00000622776 SLC38A10Q9HBR0 1119 aa28.36■■■□□ 2.13
CPSF1-214ENST00000622776 RAVER2Q9HCJ3 691 aaKnown RBP28.36■■■□□ 2.13
CPSF1-214ENST00000622776 FEM1BQ9UK73 627 aa28.36■■■□□ 2.13
CPSF1-214ENST00000622776 MYH4Q9Y623 1939 aa28.35■■■□□ 2.13
CPSF1-214ENST00000622776 KIAA0355O15063 1070 aa28.35■■■□□ 2.13
CPSF1-214ENST00000622776 ACLYP53396 1101 aa28.35■■■□□ 2.13
CPSF1-214ENST00000622776 LRRFIP1Q32MZ4 808 aaKnown RBP28.35■■■□□ 2.13
CPSF1-214ENST00000622776 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.35■■■□□ 2.13
CPSF1-214ENST00000622776 ZNF467Q7Z7K2 595 aaPredicted RBP28.35■■■□□ 2.13
CPSF1-214ENST00000622776 IFNL3Q8IZI9 196 aa28.35■■■□□ 2.13
CPSF1-214ENST00000622776 ZHX1Q9UKY1 873 aaPredicted RBP28.35■■■□□ 2.13
CPSF1-214ENST00000622776 SYNPO2Q9UMS6 1093 aa28.35■■■□□ 2.13
CPSF1-214ENST00000622776 SYNRGQ9UMZ2 1314 aa28.35■■■□□ 2.13
CPSF1-214ENST00000622776 UNC80Q8N2C7 3258 aa28.35■■■□□ 2.13
CPSF1-214ENST00000622776 TTLL1O95922 423 aa28.34■■■□□ 2.13
CPSF1-214ENST00000622776 RAG1P15918 1043 aa28.34■■■□□ 2.13
CPSF1-214ENST00000622776 SMAD3P84022 425 aaKnown RBP28.34■■■□□ 2.13
CPSF1-214ENST00000622776 LRRC47Q8N1G4 583 aaKnown RBP28.34■■■□□ 2.13
CPSF1-214ENST00000622776 KLHDC9Q8NEP7 349 aa28.34■■■□□ 2.13
CPSF1-214ENST00000622776 SEMA6BQ9H3T3 888 aa28.34■■■□□ 2.13
CPSF1-214ENST00000622776 GMCL1P1Q8NEA9 526 aa28.33■■■□□ 2.13
CPSF1-214ENST00000622776 NUP133Q8WUM0 1156 aa28.33■■■□□ 2.13
CPSF1-214ENST00000622776 STARD7Q9NQZ5 370 aa28.33■■■□□ 2.13
CPSF1-214ENST00000622776 TMEM39AQ9NV64 488 aa28.33■■■□□ 2.13
CPSF1-214ENST00000622776 FBXO40Q9UH90 709 aa28.33■■■□□ 2.13
CPSF1-214ENST00000622776 MOXD2PA6NHM9 499 aa28.32■■■□□ 2.12
CPSF1-214ENST00000622776 DUSP11O75319 330 aaKnown RBP28.32■■■□□ 2.12
CPSF1-214ENST00000622776 KCNA10Q16322 511 aa28.32■■■□□ 2.12
CPSF1-214ENST00000622776 CCSAPQ6IQ19 270 aaPredicted RBP28.32■■■□□ 2.12
CPSF1-214ENST00000622776 ANKRD33Q7Z3H0 272 aa28.32■■■□□ 2.12
CPSF1-214ENST00000622776 ANKRD35Q8N283 1001 aa28.32■■■□□ 2.12
CPSF1-214ENST00000622776 CHST13Q8NET6 341 aa28.32■■■□□ 2.12
CPSF1-214ENST00000622776 NEDD1Q8NHV4 660 aa28.32■■■□□ 2.12
CPSF1-214ENST00000622776 TOX2Q96NM4 488 aa28.32■■■□□ 2.12
CPSF1-214ENST00000622776 SEC62Q99442 399 aaKnown RBP28.32■■■□□ 2.12
CPSF1-214ENST00000622776 CDX2Q99626 313 aaPredicted RBP28.32■■■□□ 2.12
CPSF1-214ENST00000622776 NACAP1Q9BZK3 213 aa28.32■■■□□ 2.12
CPSF1-214ENST00000622776 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.32■■■□□ 2.12
CPSF1-214ENST00000622776 TSPY3P0CV98 308 aa28.31■■■□□ 2.12
CPSF1-214ENST00000622776 TSPY8P0CW00 308 aa28.31■■■□□ 2.12
CPSF1-214ENST00000622776 OAZ1P54368 228 aa28.31■■■□□ 2.12
CPSF1-214ENST00000622776 EPHB4P54760 987 aa28.31■■■□□ 2.12
CPSF1-214ENST00000622776 ACVR2BQ13705 512 aa28.31■■■□□ 2.12
CPSF1-214ENST00000622776 SLFN13Q68D06 897 aa28.31■■■□□ 2.12
CPSF1-214ENST00000622776 PHF6Q8IWS0 365 aaKnown RBP eCLIP28.31■■■□□ 2.12
CPSF1-214ENST00000622776 FGD4Q96M96 766 aa28.31■■■□□ 2.12
CPSF1-214ENST00000622776 TTC41PQ6P2S7 1318 aa28.31■■■□□ 2.12
CPSF1-214ENST00000622776 MCM3APO60318 1980 aa28.3■■■□□ 2.12
CPSF1-214ENST00000622776 PLIN4Q96Q06 1357 aa28.3■■■□□ 2.12
CPSF1-214ENST00000622776 MYADML2A6NDP7 307 aa28.3■■■□□ 2.12
CPSF1-214ENST00000622776 DCDC2CA8MYV0 355 aa28.3■■■□□ 2.12
CPSF1-214ENST00000622776 BMP3P12645 472 aa28.3■■■□□ 2.12
CPSF1-214ENST00000622776 PDE4BQ07343 736 aa28.3■■■□□ 2.12
CPSF1-214ENST00000622776 FAAP100Q0VG06 881 aa28.3■■■□□ 2.12
CPSF1-214ENST00000622776 RNPC3Q96LT9 517 aaKnown RBP28.3■■■□□ 2.12
CPSF1-214ENST00000622776 ABHD16BQ9H3Z7 469 aa28.3■■■□□ 2.12
CPSF1-214ENST00000622776 ERC2O15083 957 aa28.29■■■□□ 2.12
CPSF1-214ENST00000622776 CST5P28325 142 aaPredicted RBP28.29■■■□□ 2.12
CPSF1-214ENST00000622776 FPGSQ05932 587 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms