RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PNOCQ13519 176 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 GALNT17Q6IS24 598 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 NAPGQ99747 312 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-219ENST00000620786 NKIRAS1Q9NYS0 192 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 TTLL1O95922 423 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 MYOCDQ8IZQ8 938 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 TTLL6Q8N841 843 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 RTEL1Q9NZ71 1219 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 KDM2BQ8NHM5 1336 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 ANKARQ7Z5J8 1434 aa12.57□□□□□ -0.4
CLIP1-219ENST00000620786 STAM2O75886 525 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 TMEM191BP0C7N4 346 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 CCND2P30279 289 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 LONRF3Q496Y0 759 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 DNAJC21Q5F1R6 531 aaKnown RBP12.56□□□□□ -0.4
CLIP1-219ENST00000620786 SCYL2Q6P3W7 929 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 GTF3C6Q969F1 213 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 ASIC3Q9UHC3 531 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 ZNF274Q96GC6 653 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-219ENST00000620786 ADD3Q9UEY8 706 aaKnown RBP12.56□□□□□ -0.4
CLIP1-219ENST00000620786 PALLDQ8WX93 1383 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 ABCC4O15439 1325 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 USP17L3A6NCW0 530 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 USP17L4A6NCW7 530 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 TLR3O15455 904 aaKnown RBP12.56□□□□□ -0.4
CLIP1-219ENST00000620786 XRCC5P13010 732 aaKnown RBP12.56□□□□□ -0.4
CLIP1-219ENST00000620786 DYNLL1P63167 89 aaKnown RBP12.56□□□□□ -0.4
CLIP1-219ENST00000620786 USP17L1Q7RTZ2 530 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 SYCE1Q8N0S2 351 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 GOLGA5Q8TBA6 731 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 AMNQ9BXJ7 453 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 AFF2P51816 1311 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 MIS18BP1Q6P0N0 1132 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 SPATA24Q86W54 205 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 NOSTRINQ8IVI9 506 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 CCDC89Q8N998 374 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 C1orf112Q9NSG2 853 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 ROBO2Q9HCK4 1378 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 ASPRV1Q53RT3 343 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 C8orf74Q6P047 294 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 TRIM50Q86XT4 487 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 FAM178BQ8IXR5 827 aa12.56□□□□□ -0.4
CLIP1-219ENST00000620786 DLATP10515 647 aaKnown RBP12.55□□□□□ -0.4
CLIP1-219ENST00000620786 PTH1RQ03431 593 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 UBE3CQ15386 1083 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 MIGA2Q7L4E1 593 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 SLC10A4Q96EP9 437 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 TRERF1Q96PN7 1200 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 TRIM31Q9BZY9 425 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 PIM2Q9P1W9 311 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 CALCOCO1Q9P1Z2 691 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 FGAP02671 866 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 PCP11498 1178 aaKnown RBP12.55□□□□□ -0.4
CLIP1-219ENST00000620786 ITKQ08881 620 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 ARMCX5Q6P1M9 558 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 CPLX4Q7Z7G2 160 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 TRMT44Q8IYL2 757 aaKnown RBP12.55□□□□□ -0.4
CLIP1-219ENST00000620786 TIGD1Q96MW7 591 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 FAM207AQ9NSI2 230 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-219ENST00000620786 ZHX1Q9UKY1 873 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-219ENST00000620786 PALD1Q9ULE6 856 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 ATP7BP35670 1465 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 FOSP01100 380 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-219ENST00000620786 MMP10P09238 476 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 KIF11P52732 1056 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 RETREG2Q8NC44 543 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 MASTLQ96GX5 879 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 ZNF577Q9BSK1 485 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 PARP2Q9UGN5 583 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 CEP104O60308 925 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 USP6P35125 1406 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 PIK3CAP42336 1068 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 ME3Q16798 604 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 RRAGAQ7L523 313 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 AFAP1L2Q8N4X5 818 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 HESX1Q9UBX0 185 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 SAMD9LQ8IVG5 1584 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 DYNC1I1O14576 645 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 VPS52Q8N1B4 723 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 SAMD15Q9P1V8 674 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 NFE2L3Q9Y4A8 694 aa12.55□□□□□ -0.4
CLIP1-219ENST00000620786 GOLGA6CA6NDK9 693 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 GOLGA6BA6NDN3 693 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 C21orf2O43822 256 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 N4BP1O75113 896 aaKnown RBP12.54□□□□□ -0.4
CLIP1-219ENST00000620786 GOLGA6DP0CG33 693 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 MAGEA1P43355 309 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 PPP2R3AQ06190 1150 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 GRAPQ13588 217 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 SETDB1Q15047 1291 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 LRCH2Q5VUJ6 765 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 BSPRYQ5W0U4 402 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 SRGAP1Q7Z6B7 1085 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 KRT222Q8N1A0 295 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 GRAPLQ8TC17 118 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-219ENST00000620786 U2AF1L4Q8WU68 220 aaKnown RBP12.54□□□□□ -0.4
CLIP1-219ENST00000620786 NLRC4Q9NPP4 1024 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 GOLGA6AQ9NYA3 693 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 AFG3L2Q9Y4W6 797 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 ADCY9O60503 1353 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms