RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 GRAMD1CQ8IYS0 662 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 CCDC12Q8WUD4 166 aaPredicted RBP22.99■■□□□ 1.27
MMP28-207ENST00000619655 FERMT2Q96AC1 680 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 ZNF830Q96NB3 372 aaPredicted RBP22.99■■□□□ 1.27
MMP28-207ENST00000619655 PIM2Q9P1W9 311 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 SLC16A2P36021 539 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 TTBK2Q6IQ55 1244 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 OGFOD1Q8N543 542 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 DHX58Q96C10 678 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 CSRNP1Q96S65 589 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 RIOX1Q9H6W3 641 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 SNHG28P0DPA3 235 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 ZNF543Q08ER8 600 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 ZMYND12Q9H0C1 365 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.98■■□□□ 1.27
MMP28-207ENST00000619655 PSME4Q14997 1843 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 EEF2P13639 858 aaKnown RBP22.98■■□□□ 1.27
MMP28-207ENST00000619655 GALNT17Q6IS24 598 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 NIM1KQ8IY84 436 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 DAGLBQ8NCG7 672 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 COA7Q96BR5 231 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 C6orf50Q9HD87 102 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 TMOD2Q9NZR1 351 aa22.98■■□□□ 1.27
MMP28-207ENST00000619655 SPDYE2BA6NHP3 402 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 VIL1P09327 827 aaKnown RBP22.97■■□□□ 1.27
MMP28-207ENST00000619655 SPDYE6P0CI01 402 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 POLD1P28340 1107 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 SMARCA1P28370 1054 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 SEPT2Q15019 361 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 DLGAP5Q15398 846 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 FOXP4Q8IVH2 680 aaPredicted RBP22.97■■□□□ 1.27
MMP28-207ENST00000619655 HOOK1Q9UJC3 728 aaKnown RBP22.97■■□□□ 1.27
MMP28-207ENST00000619655 TUBE1Q9UJT0 475 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 HDAC9Q9UKV0 1011 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 PCDHA5Q9Y5H7 936 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 GREB1LQ9C091 1923 aaPredicted RBP22.97■■□□□ 1.27
MMP28-207ENST00000619655 A0A087X0B3 334 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 PRR29P0C7W0 189 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 POSTNQ15063 836 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 DRC7Q8IY82 874 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 ZKSCAN5Q9Y2L8 839 aa22.97■■□□□ 1.27
MMP28-207ENST00000619655 ADGRF4Q8IZF3 695 aa22.96■■□□□ 1.27
MMP28-207ENST00000619655 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.96■■□□□ 1.27
MMP28-207ENST00000619655 KIF13BQ9NQT8 1826 aa22.96■■□□□ 1.27
MMP28-207ENST00000619655 ENTPD3O75355 529 aa22.96■■□□□ 1.27
MMP28-207ENST00000619655 GNA11P29992 359 aa22.96■■□□□ 1.27
MMP28-207ENST00000619655 TATDN1Q6P1N9 297 aa22.96■■□□□ 1.27
MMP28-207ENST00000619655 VEZTQ9HBM0 779 aa22.96■■□□□ 1.27
MMP28-207ENST00000619655 BIN2Q9UBW5 565 aaPredicted RBP22.96■■□□□ 1.27
MMP28-207ENST00000619655 ZNRF3Q9ULT6 936 aa22.96■■□□□ 1.27
MMP28-207ENST00000619655 NPM3O75607 178 aaKnown RBP22.95■■□□□ 1.26
MMP28-207ENST00000619655 ZNF75DP51815 510 aa22.95■■□□□ 1.26
MMP28-207ENST00000619655 ICA1Q05084 483 aa22.95■■□□□ 1.26
MMP28-207ENST00000619655 IL17AQ16552 155 aa22.95■■□□□ 1.26
MMP28-207ENST00000619655 ABCB5Q2M3G0 1257 aa22.95■■□□□ 1.26
MMP28-207ENST00000619655 DALRD3Q5D0E6 543 aaKnown RBP22.95■■□□□ 1.26
MMP28-207ENST00000619655 UBE2Q2Q8WVN8 375 aa22.95■■□□□ 1.26
MMP28-207ENST00000619655 TTC12Q9H892 705 aaPredicted RBP22.95■■□□□ 1.26
MMP28-207ENST00000619655 KANSL2Q9H9L4 492 aa22.95■■□□□ 1.26
MMP28-207ENST00000619655 ACTN4O43707 911 aaKnown RBP22.94■■□□□ 1.26
MMP28-207ENST00000619655 MDM2Q00987 491 aaPredicted RBP22.94■■□□□ 1.26
MMP28-207ENST00000619655 JAKMIP3Q5VZ66 844 aa22.94■■□□□ 1.26
MMP28-207ENST00000619655 JMJD4Q9H9V9 463 aa22.94■■□□□ 1.26
MMP28-207ENST00000619655 MORC2Q9Y6X9 1032 aaPredicted RBP22.94■■□□□ 1.26
MMP28-207ENST00000619655 AFMP43652 599 aa22.94■■□□□ 1.26
MMP28-207ENST00000619655 TGFB2P61812 414 aa22.94■■□□□ 1.26
MMP28-207ENST00000619655 GMLQ99445 158 aa22.94■■□□□ 1.26
MMP28-207ENST00000619655 CDC25AP30304 524 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 LETM2Q2VYF4 491 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 GPATCH4Q5T3I0 446 aaKnown RBP22.93■■□□□ 1.26
MMP28-207ENST00000619655 PLA2G4DQ86XP0 818 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 TMEM260Q9NX78 707 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 ZNF70Q9UC06 446 aaPredicted RBP22.93■■□□□ 1.26
MMP28-207ENST00000619655 ATRNL1Q5VV63 1379 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 USP17L10C9JJH3 530 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 GH2P01242 217 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 SLC1A4P43007 532 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 R3HDM1Q15032 1099 aaKnown RBP22.93■■□□□ 1.26
MMP28-207ENST00000619655 TMEM179Q6ZVK1 233 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 REXO1Q8N1G1 1221 aaKnown RBP22.93■■□□□ 1.26
MMP28-207ENST00000619655 MTFR1LQ9H019 292 aa22.93■■□□□ 1.26
MMP28-207ENST00000619655 CCNT1O60563 726 aaKnown RBP22.92■■□□□ 1.26
MMP28-207ENST00000619655 NONOQ15233 471 aaKnown RBP eCLIP22.92■■□□□ 1.26
MMP28-207ENST00000619655 PPP4R3BQ5MIZ7 849 aa22.92■■□□□ 1.26
MMP28-207ENST00000619655 TMEM60Q9H2L4 133 aa22.92■■□□□ 1.26
MMP28-207ENST00000619655 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.92■■□□□ 1.26
MMP28-207ENST00000619655 JAG1P78504 1218 aa22.92■■□□□ 1.26
MMP28-207ENST00000619655 SLFN13Q68D06 897 aa22.92■■□□□ 1.26
MMP28-207ENST00000619655 KRT25Q7Z3Z0 450 aa22.92■■□□□ 1.26
MMP28-207ENST00000619655 C4orf32Q8N8J7 132 aa22.92■■□□□ 1.26
MMP28-207ENST00000619655 SMARCE1Q969G3 411 aa22.92■■□□□ 1.26
MMP28-207ENST00000619655 CASP1P29466 404 aa22.91■■□□□ 1.26
MMP28-207ENST00000619655 CXCL9Q07325 125 aa22.91■■□□□ 1.26
MMP28-207ENST00000619655 RRP1BQ14684 758 aaKnown RBP22.91■■□□□ 1.26
MMP28-207ENST00000619655 RBM26Q5T8P6 1007 aaKnown RBP22.91■■□□□ 1.26
MMP28-207ENST00000619655 BPIFA3Q9BQP9 254 aa22.91■■□□□ 1.26
MMP28-207ENST00000619655 TAOK3Q9H2K8 898 aa22.91■■□□□ 1.26
MMP28-207ENST00000619655 NYAP2Q9P242 653 aa22.91■■□□□ 1.26
MMP28-207ENST00000619655 PNMA6FA0A0J9YX94 578 aa22.91■■□□□ 1.26
MMP28-207ENST00000619655 GOLGA6L6A8MZA4 724 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms