RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 IFIT5Q13325 482 aaKnown RBP16.4■□□□□ 0.22
COL5A1-208ENST00000618395 TMEM87AQ8NBN3 555 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 ESR2Q92731 530 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 TTC1Q99614 292 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 NDE1Q9NXR1 346 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 PLCB4Q15147 1175 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 TMTC4Q5T4D3 741 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 KSR1Q8IVT5 923 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 HOOK2Q96ED9 719 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 ARHGAP5Q13017 1502 aa16.4■□□□□ 0.22
COL5A1-208ENST00000618395 DAPK3O43293 454 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 GSDMAQ96QA5 445 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 TRAF3IP3Q9Y228 551 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 KDM2BQ8NHM5 1336 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 ATF2P15336 505 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 CASP2P42575 452 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 PARD6BQ9BYG5 372 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 TMEM60Q9H2L4 133 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 H3BRJ5 948 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 CAPN9O14815 690 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 NPR1P16066 1061 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 AP1B1Q10567 949 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 TRIM59Q8IWR1 403 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 GNAT3A8MTJ3 354 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 MFSD4BQ5TF39 518 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 KCNV2Q8TDN2 545 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 TLK1Q9UKI8 766 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 ANKRD65E5RJM6 399 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 MMEP08473 750 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 CCDC85BQ15834 202 aaPredicted RBP16.39■□□□□ 0.21
COL5A1-208ENST00000618395 ZBTB10Q96DT7 871 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 THOC1Q96FV9 657 aaKnown RBP16.39■□□□□ 0.21
COL5A1-208ENST00000618395 LRRC37BQ96QE4 947 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 RTL9Q8NET4 1388 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 SERPINB2P05120 415 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 CATSPER1Q8NEC5 780 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 OMA1Q96E52 524 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 TCEANC2Q96MN5 208 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 MORC2Q9Y6X9 1032 aaPredicted RBP16.39■□□□□ 0.21
COL5A1-208ENST00000618395 TSPY3P0CV98 308 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 TSPY8P0CW00 308 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 TSPY1Q01534 308 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 KAZNQ674X7 775 aa16.39■□□□□ 0.21
COL5A1-208ENST00000618395 RARS2Q5T160 578 aaKnown RBP16.38■□□□□ 0.21
COL5A1-208ENST00000618395 DCUN1D2Q6PH85 259 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 CFAP36Q96G28 342 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 NONOQ15233 471 aaKnown RBP eCLIP16.38■□□□□ 0.21
COL5A1-208ENST00000618395 GOLGA8IPA6NC78 632 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 CNGA3Q16281 694 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 MRPS26Q9BYN8 205 aaKnown RBP16.38■□□□□ 0.21
COL5A1-208ENST00000618395 DNAJC17Q9NVM6 304 aaKnown RBP16.38■□□□□ 0.21
COL5A1-208ENST00000618395 CUTAO60888 179 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 GPC4O75487 556 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 SLC4A1P02730 911 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 GARSP41250 739 aaKnown RBP16.38■□□□□ 0.21
COL5A1-208ENST00000618395 PDE6CP51160 858 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 SLC8A3P57103 927 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 CEP78Q5JTW2 689 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 TUBGCP3Q96CW5 907 aa16.38■□□□□ 0.21
COL5A1-208ENST00000618395 H0YC42 278 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 SNUPNO95149 360 aaKnown RBP16.37■□□□□ 0.21
COL5A1-208ENST00000618395 ZBED2Q9BTP6 218 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 DPH5Q9H2P9 285 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 SBNO1A3KN83 1393 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 GABPAQ06546 454 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 C1orf146Q5VVC0 180 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 ANO1Q5XXA6 986 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 SPATA17Q96L03 361 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 EPB41L5Q9HCM4 733 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 GADD45BO75293 160 aaPredicted RBP16.37■□□□□ 0.21
COL5A1-208ENST00000618395 MAP4P27816 1152 aaKnown RBP16.37■□□□□ 0.21
COL5A1-208ENST00000618395 NAPAP54920 295 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 DEFA1P59665 94 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 DEFA3P59666 94 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 PDE4DQ08499 809 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 CAMSAP2Q08AD1 1489 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 SERPINB3P29508 390 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 MAML1Q92585 1016 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 USP26Q9BXU7 913 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 GSTA4O15217 222 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 TPD52L2O43399 206 aaKnown RBP16.37■□□□□ 0.21
COL5A1-208ENST00000618395 ALDH1L1O75891 902 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 CCDC80Q76M96 950 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 RRAGAQ7L523 313 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 PYGLP06737 847 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 NELFBQ8WX92 580 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 NUDCD1Q96RS6 583 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 KIF9Q9HAQ2 790 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 ARHGDIAP52565 204 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 MRPS35P82673 323 aaKnown RBP16.37■□□□□ 0.21
COL5A1-208ENST00000618395 HIC2Q96JB3 615 aa16.37■□□□□ 0.21
COL5A1-208ENST00000618395 POC1B-GALNT4F8VUJ3 575 aa16.36■□□□□ 0.21
COL5A1-208ENST00000618395 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.36■□□□□ 0.211e-6■■■■■ 56.1
COL5A1-208ENST00000618395 MRPL40Q9NQ50 206 aaKnown RBP16.36■□□□□ 0.21
COL5A1-208ENST00000618395 NCBP1Q09161 790 aaKnown RBP16.36■□□□□ 0.21
COL5A1-208ENST00000618395 ATP8A1Q9Y2Q0 1164 aa16.36■□□□□ 0.21
COL5A1-208ENST00000618395 TMC5Q6UXY8 1006 aa16.36■□□□□ 0.21
COL5A1-208ENST00000618395 LZICQ8WZA0 190 aa16.36■□□□□ 0.21
COL5A1-208ENST00000618395 ZNF692Q9BU19 519 aaPredicted RBP16.36■□□□□ 0.21
COL5A1-208ENST00000618395 ZNF652Q9Y2D9 606 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms