RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.28■□□□□ 0.04
GGA3-220ENST00000613421 TRIM58Q8NG06 486 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 ZDHHC9Q9Y397 364 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 SOS2Q07890 1332 aaPredicted RBP15.28■□□□□ 0.04
GGA3-220ENST00000613421 SETD1BQ9UPS6 1966 aaKnown RBP15.27■□□□□ 0.04
GGA3-220ENST00000613421 GOLGA6CA6NDK9 693 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 GOLGA6DP0CG33 693 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 LARGE2Q8N3Y3 721 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 UBL4BQ8N7F7 174 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 GOLGA6AQ9NYA3 693 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 GOLGA6BA6NDN3 693 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 LAD1O00515 517 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 MYCLP12524 364 aaPredicted RBP15.27■□□□□ 0.04
GGA3-220ENST00000613421 POLD1P28340 1107 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 MCTP2Q6DN12 878 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 PPP1R14CQ8TAE6 165 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 HAUS4Q9H6D7 363 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 STK32BQ9NY57 414 aa15.27■□□□□ 0.04
GGA3-220ENST00000613421 MYCNP04198 464 aaPredicted RBP15.27■□□□□ 0.03
GGA3-220ENST00000613421 RPS6KA1Q15418 735 aa15.27■□□□□ 0.03
GGA3-220ENST00000613421 SLFNL1Q499Z3 407 aa15.27■□□□□ 0.03
GGA3-220ENST00000613421 IFT74Q96LB3 600 aa15.27■□□□□ 0.03
GGA3-220ENST00000613421 MAN1B1Q9UKM7 699 aa15.27■□□□□ 0.03
GGA3-220ENST00000613421 UTP11Q9Y3A2 253 aaKnown RBP15.27■□□□□ 0.03
GGA3-220ENST00000613421 DKC1O60832 514 aaKnown RBP eCLIP15.27■□□□□ 0.03
GGA3-220ENST00000613421 DIP2CQ9Y2E4 1556 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 ACTN4O43707 911 aaKnown RBP15.26■□□□□ 0.03
GGA3-220ENST00000613421 SLFN14P0C7P3 912 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 STRBPQ96SI9 672 aaKnown RBP15.26■□□□□ 0.03
GGA3-220ENST00000613421 DDX25Q9UHL0 483 aaKnown RBP15.26■□□□□ 0.03
GGA3-220ENST00000613421 PAK2Q13177 524 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 DPH6Q7L8W6 267 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 SYCE1Q8N0S2 351 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 LRRC45Q96CN5 670 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 CUEDC2Q9H467 287 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 SLC39A2Q9NP94 309 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 CTTNBP2NLQ9P2B4 639 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 ZC3H13Q5T200 1668 aaKnown RBP15.26■□□□□ 0.03
GGA3-220ENST00000613421 CASP14P31944 242 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 PDE6BP35913 854 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 TPH2Q8IWU9 490 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 KLHL7Q8IXQ5 586 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 GRAMD1CQ8IYS0 662 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 CPXCR1Q8N123 301 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 PICK1Q9NRD5 415 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 REREQ9P2R6 1566 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 HARSP12081 509 aaKnown RBP15.26■□□□□ 0.03
GGA3-220ENST00000613421 HLFQ16534 295 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 PRR16Q569H4 304 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 SUSD4Q5VX71 490 aa15.26■□□□□ 0.03
GGA3-220ENST00000613421 PRPF3O43395 683 aaKnown RBP15.25■□□□□ 0.03
GGA3-220ENST00000613421 XRCC5P13010 732 aaKnown RBP15.25■□□□□ 0.03
GGA3-220ENST00000613421 HPDP32754 393 aaPredicted RBP15.25■□□□□ 0.03
GGA3-220ENST00000613421 SCNN1DP51172 638 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 SLFN12Q8IYM2 578 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 PANK4Q9NVE7 773 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 GAS7O60861 476 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 BCRP11274 1271 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 NF2P35240 595 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 SND1Q7KZF4 910 aaKnown RBP eCLIP15.25■□□□□ 0.03
GGA3-220ENST00000613421 RASGRP4Q8TDF6 673 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 SRPRBQ9Y5M8 271 aaKnown RBP15.25■□□□□ 0.03
GGA3-220ENST00000613421 MSL1Q68DK7 614 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 PEX26Q7Z412 305 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 PCDHB13Q9Y5F0 798 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 EPN1Q9Y6I3 576 aaPredicted RBP15.25■□□□□ 0.03
GGA3-220ENST00000613421 DLGAP5Q15398 846 aa15.25■□□□□ 0.03
GGA3-220ENST00000613421 GOLGA8FQ08AF8 430 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 GOLGA8DPQ0D2H9 430 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 BRINP3Q76B58 766 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 SMYD4Q8IYR2 804 aaPredicted RBP15.24■□□□□ 0.03
GGA3-220ENST00000613421 CHURC1Q8WUH1 139 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 KIFC2Q96AC6 838 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 PCDHB6Q9Y5E3 794 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 ABCC12Q96J65 1359 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 CERKLQ49MI3 558 aaPredicted RBP15.24■□□□□ 0.03
GGA3-220ENST00000613421 STRN3Q13033 797 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 FAM26FQ5R3K3 315 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 ENOX1Q8TC92 643 aaKnown RBP15.24■□□□□ 0.03
GGA3-220ENST00000613421 AK8Q96MA6 479 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 KCNK9Q9NPC2 374 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 TRIM31Q9BZY9 425 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.24■□□□□ 0.03
GGA3-220ENST00000613421 SAMD15Q9P1V8 674 aa15.24■□□□□ 0.03
GGA3-220ENST00000613421 RPAP1Q9BWH6 1393 aaPredicted RBP15.24■□□□□ 0.03
GGA3-220ENST00000613421 OVOS2A0A0J9YW53 1432 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 OVOS2Q6IE36 1432 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 COBLO75128 1261 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 ZBED4O75132 1171 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 NCBP1Q09161 790 aaKnown RBP15.23■□□□□ 0.03
GGA3-220ENST00000613421 DOK7Q18PE1 504 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 NSMFQ6X4W1 530 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 PGBD1Q96JS3 809 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 CNOT6LQ96LI5 555 aaKnown RBP15.23■□□□□ 0.03
GGA3-220ENST00000613421 TSNARE1Q96NA8 513 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 TMOD4Q9NZQ9 345 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 ARMCX3Q9UH62 379 aaPredicted RBP15.23■□□□□ 0.03
GGA3-220ENST00000613421 HYOU1Q9Y4L1 999 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 GJA3Q9Y6H8 435 aa15.23■□□□□ 0.03
GGA3-220ENST00000613421 CLTCQ00610 1675 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms