RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 SLF1Q9BQI6 1058 aa10.3□□□□□ -0.76
SMAD4-217ENST00000611848 KAT14Q9H8E8 782 aa10.3□□□□□ -0.76
SMAD4-217ENST00000611848 EFCC1Q9HA90 598 aa10.3□□□□□ -0.76
SMAD4-217ENST00000611848 RBPJLQ9UBG7 517 aa10.3□□□□□ -0.76
SMAD4-217ENST00000611848 PPP1R9AQ9ULJ8 1098 aa10.3□□□□□ -0.76
SMAD4-217ENST00000611848 IFIT3O14879 490 aaKnown RBP10.29□□□□□ -0.76
SMAD4-217ENST00000611848 BAG4O95429 457 aaKnown RBP10.29□□□□□ -0.76
SMAD4-217ENST00000611848 FDX1P10109 184 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 HOXD10P28358 340 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 PSMC4P43686 418 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 FCGRTP55899 365 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 CCNA1P78396 465 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 SEC23AQ15436 765 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 IFIT1BQ5T764 474 aaKnown RBP10.29□□□□□ -0.76
SMAD4-217ENST00000611848 OTOP1Q7RTM1 612 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 FAM160B2Q86V87 743 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 RASEFQ8IZ41 740 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 PNMA1Q8ND90 353 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 CHURC1Q8WUH1 139 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 ATG4CQ96DT6 458 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 NEK1Q96PY6 1258 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 PAGR1Q9BTK6 254 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 TXNRD2Q9NNW7 524 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 FBXO28Q9NVF7 368 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 ADAMTS5Q9UNA0 930 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 TRIM17Q9Y577 477 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 COL11A1P12107 1806 aaPredicted RBP10.29□□□□□ -0.76
SMAD4-217ENST00000611848 TMEM232C9JQI7 657 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 CNMDO75829 334 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 FMNL1O95466 1100 aaPredicted RBP10.29□□□□□ -0.76
SMAD4-217ENST00000611848 SNHG28P0DPA3 235 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 PDHBP11177 359 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 STAT2P52630 851 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 PRMT2P55345 433 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 ANTXR2P58335 489 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 WTAPQ15007 396 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 Q3C1V9 767 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 POTEEQ6S8J3 1075 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 CCAR1Q8IX12 1150 aaKnown RBP10.29□□□□□ -0.76
SMAD4-217ENST00000611848 TMEM87BQ96K49 555 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 BTBD7Q9P203 1132 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 MTMR7Q9Y216 660 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 ZDHHC9Q9Y397 364 aa10.29□□□□□ -0.76
SMAD4-217ENST00000611848 A0A0G2JMZ2 1700 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 FSD2A1L4K1 749 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 VWA5AO00534 786 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 HMGB1P09429 215 aaKnown RBP10.28□□□□□ -0.76
SMAD4-217ENST00000611848 CTGFP29279 349 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 MAPK4P31152 587 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 CCDC96Q2M329 555 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 TMEM67Q5HYA8 995 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 GPATCH4Q5T3I0 446 aaKnown RBP10.28□□□□□ -0.76
SMAD4-217ENST00000611848 KCTD1Q719H9 257 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 CHST3Q7LGC8 479 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 TMTC2Q8N394 836 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 IGDCC4Q8TDY8 1250 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 COA7Q96BR5 231 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 TRIM47Q96LD4 638 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 UPF3BQ9BZI7 483 aaKnown RBP10.28□□□□□ -0.76
SMAD4-217ENST00000611848 TM6SF1Q9BZW5 370 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 ARHGAP39Q9C0H5 1083 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 SPATC1LQ9H0A9 340 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 ISY1Q9ULR0 285 aaKnown RBP10.28□□□□□ -0.76
SMAD4-217ENST00000611848 CTDP1Q9Y5B0 961 aaPredicted RBP10.28□□□□□ -0.76
SMAD4-217ENST00000611848 WDR19Q8NEZ3 1342 aa10.28□□□□□ -0.76
SMAD4-217ENST00000611848 ZSWIM8A7E2V4 1837 aa10.27□□□□□ -0.76
SMAD4-217ENST00000611848 GOLGA6L22H0YM25 854 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 TNPO2O14787 897 aaKnown RBP10.27□□□□□ -0.77
SMAD4-217ENST00000611848 PRC1O43663 620 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 ZBED4O75132 1171 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 PSMA5P28066 241 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 CAP1Q01518 475 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 ZNF543Q08ER8 600 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 IKQ13123 557 aaPredicted RBP10.27□□□□□ -0.77
SMAD4-217ENST00000611848 PKP1Q13835 747 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 FBXO46Q6PJ61 603 aaPredicted RBP10.27□□□□□ -0.77
SMAD4-217ENST00000611848 BTNL9Q6UXG8 535 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 DHX32Q7L7V1 743 aaKnown RBP10.27□□□□□ -0.77
SMAD4-217ENST00000611848 REPS2Q8NFH8 660 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 KIFC2Q96AC6 838 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 MCOLN1Q9GZU1 580 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 SRRDQ9UH36 339 aa10.27□□□□□ -0.77
SMAD4-217ENST00000611848 ATP2A1O14983 1001 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 PEX10O60683 326 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 SLC25A27O95847 323 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 COPB2P35606 906 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 STAT3P40763 770 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 LIFRP42702 1097 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 OAZ1P54368 228 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 EXOSC10Q01780 885 aaKnown RBP10.26□□□□□ -0.77
SMAD4-217ENST00000611848 PLS1Q14651 629 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 TMEM132BQ14DG7 1078 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 ADCK5Q3MIX3 580 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 ASPRV1Q53RT3 343 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 L1TD1Q5T7N2 865 aaKnown RBP10.26□□□□□ -0.77
SMAD4-217ENST00000611848 CATIPQ7Z7H3 387 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 SHCBP1Q8NEM2 672 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 CHMP4CQ96CF2 233 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 PORCNQ9H237 461 aa10.26□□□□□ -0.77
SMAD4-217ENST00000611848 SLC38A10Q9HBR0 1119 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms