RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TSPYL2Q9H2G4 693 aaPredicted RBP7.55□□□□□ -1.2
CUX1-220ENST00000607092 ANTXR1Q9H6X2 564 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 TLR7Q9NYK1 1049 aaKnown RBP7.55□□□□□ -1.2
CUX1-220ENST00000607092 PPP1R9AQ9ULJ8 1098 aa7.55□□□□□ -1.2
CUX1-220ENST00000607092 RLFQ13129 1914 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 TRIM43BA6NCK2 446 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ATP2A1O14983 1001 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ZBED4O75132 1171 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 DUSP11O75319 330 aaKnown RBP7.54□□□□□ -1.2
CUX1-220ENST00000607092 TIMP1P01033 207 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 CHRM1P11229 460 aaPredicted RBP7.54□□□□□ -1.2
CUX1-220ENST00000607092 DNAJB2P25686 324 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 CST5P28325 142 aaPredicted RBP7.54□□□□□ -1.2
CUX1-220ENST00000607092 CDK8P49336 464 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ACLYP53396 1101 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 OAZ1P54368 228 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 TMEM132BQ14DG7 1078 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 UBE3CQ15386 1083 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 RAB30Q15771 203 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ZNF792Q3KQV3 632 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 AKNAD1Q5T1N1 836 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 C12orf60Q5U649 245 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ANO1Q5XXA6 986 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 MFSD5Q6N075 450 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 MAMDC4Q6UXC1 1216 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 C16orf86Q6ZW13 317 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 SPICE1Q8N0Z3 855 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 SDR42E1Q8WUS8 393 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ATXN2LQ8WWM7 1075 aaKnown RBP7.54□□□□□ -1.2
CUX1-220ENST00000607092 MYLIPQ8WY64 445 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 TRIM43Q96BQ3 446 aaPredicted RBP7.54□□□□□ -1.2
CUX1-220ENST00000607092 TIFAQ96CG3 184 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 DNAJC2Q99543 621 aaKnown RBP7.54□□□□□ -1.2
CUX1-220ENST00000607092 SLF1Q9BQI6 1058 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ABHD16BQ9H3Z7 469 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 C1orf115Q9H7X2 142 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 PAG1Q9NWQ8 432 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 MSRAQ9UJ68 235 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ZNF214Q9UL59 606 aaPredicted RBP7.54□□□□□ -1.2
CUX1-220ENST00000607092 DDX19BQ9UMR2 479 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 EXOC6BQ9Y2D4 811 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 A0A0G2JMZ2 1700 aa7.54□□□□□ -1.2
CUX1-220ENST00000607092 ZBED9Q6R2W3 1325 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 LTBP2Q14767 1821 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 A0A0U1RQG5 324 aaPredicted RBP7.53□□□□□ -1.2
CUX1-220ENST00000607092 TCRBV5S4A2TA0A5A2 114 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 USP17L12C9JPN9 530 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 USP17L21D6R901 530 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 RAD21O60216 631 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 ZEB2O60315 1214 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 ADAMTS4O75173 837 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 MBD4O95243 580 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 EEF2P13639 858 aaKnown RBP7.53□□□□□ -1.2
CUX1-220ENST00000607092 AKR1B1P15121 316 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 ATP5JP18859 108 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 GNAT2P19087 354 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 ADD2P35612 726 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.53□□□□□ -1.26e-12■■■■■ 49.8
CUX1-220ENST00000607092 LCORLQ8N3X6 602 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 CHST13Q8NET6 341 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 VTI1AQ96AJ9 217 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 GPATCH3Q96I76 525 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 TTYH1Q9H313 450 aaPredicted RBP7.53□□□□□ -1.2
CUX1-220ENST00000607092 ZNF576Q9H609 170 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 ARMT1Q9H993 441 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 MKNK2Q9HBH9 465 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 NYAP2Q9P242 653 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 NAV1Q8NEY1 1877 aa7.53□□□□□ -1.2
CUX1-220ENST00000607092 SYNRGQ9UMZ2 1314 aa7.52□□□□□ -1.2
CUX1-220ENST00000607092 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 TNFRSF10AO00220 468 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 PGK1P00558 417 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 PGK2P07205 417 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 ZFYP08048 801 aaPredicted RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 SLC3A2P08195 630 aaKnown RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 C6orf222P0C671 652 aaPredicted RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 ZNF865P0CJ78 1059 aaPredicted RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 PYGBP11216 843 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 GJA9P57773 515 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 FAAP100Q0VG06 881 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 ACVR2BQ13705 512 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 KCNA10Q16322 511 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 AAK1Q2M2I8 961 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 TKFCQ3LXA3 575 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 SBK1Q52WX2 424 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 PRAMEF19Q5SWL8 479 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 FAM83BQ5T0W9 1011 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 SNRNP48Q6IEG0 339 aaKnown RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 SH3RF1Q7Z6J0 888 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 RPUSD2Q8IZ73 545 aaKnown RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 ANKRD35Q8N283 1001 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 KLHDC9Q8NEP7 349 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 ZFP91Q96JP5 570 aaPredicted RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 IL1RAPL2Q9NP60 686 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 THEGQ9P2T0 379 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 FEM1BQ9UK73 627 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 ZHX1Q9UKY1 873 aaPredicted RBP7.52□□□□□ -1.21
CUX1-220ENST00000607092 TBX21Q9UL17 535 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 STK24Q9Y6E0 443 aa7.52□□□□□ -1.21
CUX1-220ENST00000607092 SLC4A4Q9Y6R1 1079 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms