RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 FBXO28Q9NVF7 368 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 CLIP2Q9UDT6 1046 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 FEM1BQ9UK73 627 aa11.44□□□□□ -0.58
VRK3-224ENST00000601849 ZNF214Q9UL59 606 aaPredicted RBP11.44□□□□□ -0.58
VRK3-224ENST00000601849 A0A1W2PQ45 241 aaPredicted RBP11.43□□□□□ -0.58
VRK3-224ENST00000601849 A0A1W2PQY0 241 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 TRIM43BA6NCK2 446 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 ZNF865P0CJ78 1059 aaPredicted RBP11.43□□□□□ -0.58
VRK3-224ENST00000601849 ACLYP53396 1101 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 FPGSQ05932 587 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 PDE4BQ07343 736 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 SLFNL1Q499Z3 407 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 ZNF467Q7Z7K2 595 aaPredicted RBP11.43□□□□□ -0.58
VRK3-224ENST00000601849 CPXCR1Q8N123 301 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 STK11IPQ8N1F8 1099 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 KIFC2Q96AC6 838 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 TRIM43Q96BQ3 446 aaPredicted RBP11.43□□□□□ -0.58
VRK3-224ENST00000601849 RNPC3Q96LT9 517 aaKnown RBP11.43□□□□□ -0.58
VRK3-224ENST00000601849 GUCD1Q96NT3 240 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 CDX2Q99626 313 aaPredicted RBP11.43□□□□□ -0.58
VRK3-224ENST00000601849 ABHD16BQ9H3Z7 469 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 RCAN3Q9UKA8 241 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 ZHX1Q9UKY1 873 aaPredicted RBP11.43□□□□□ -0.58
VRK3-224ENST00000601849 ISY1Q9ULR0 285 aaKnown RBP11.43□□□□□ -0.58
VRK3-224ENST00000601849 SYNPO2Q9UMS6 1093 aa11.43□□□□□ -0.58
VRK3-224ENST00000601849 FRMPD3Q5JV73 1810 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 TMEM265A0A087WTH1 108 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.42□□□□□ -0.58
VRK3-224ENST00000601849 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.42□□□□□ -0.58
VRK3-224ENST00000601849 PATL2C9JE40 543 aaKnown RBP11.42□□□□□ -0.58
VRK3-224ENST00000601849 ATP2A1O14983 1001 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 KIAA0355O15063 1070 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 TLR3O15455 904 aaKnown RBP11.42□□□□□ -0.58
VRK3-224ENST00000601849 RNF113AO15541 343 aaKnown RBP11.42□□□□□ -0.58
VRK3-224ENST00000601849 DUSP11O75319 330 aaKnown RBP11.42□□□□□ -0.58
VRK3-224ENST00000601849 TTLL1O95922 423 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 OAZ1P54368 228 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 ACVR2BQ13705 512 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 C9orf50Q5SZB4 431 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 MAMDC4Q6UXC1 1216 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 ANKRD33Q7Z3H0 272 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 SH3RF1Q7Z6J0 888 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 KBTBD3Q8NAB2 608 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 CHST13Q8NET6 341 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 CHURC1Q8WUH1 139 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 APPBP2Q92624 585 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 SYMPKQ92797 1274 aaKnown RBP11.42□□□□□ -0.58
VRK3-224ENST00000601849 MYH8P13535 1937 aa11.42□□□□□ -0.58
VRK3-224ENST00000601849 ELP1O95163 1332 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 GSG1L2A8MUP6 293 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 ERC2O15083 957 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 NDUFB10O96000 172 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 C6orf222P0C671 652 aaPredicted RBP11.41□□□□□ -0.58
VRK3-224ENST00000601849 TSPY3P0CV98 308 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 TSPY8P0CW00 308 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 FOSL2P15408 326 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 TAL1P17542 331 aaPredicted RBP11.41□□□□□ -0.58
VRK3-224ENST00000601849 RASA1P20936 1047 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 IKQ13123 557 aaPredicted RBP11.41□□□□□ -0.58
VRK3-224ENST00000601849 KCNA10Q16322 511 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 TMEM199Q8N511 208 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 MAFAQ8NHW3 353 aaPredicted RBP11.41□□□□□ -0.58
VRK3-224ENST00000601849 MKL1Q969V6 931 aa11.41□□□□□ -0.58
VRK3-224ENST00000601849 ZBTB47Q9UFB7 747 aaPredicted RBP11.41□□□□□ -0.58
VRK3-224ENST00000601849 A0A0G2JMZ2 1700 aa11.4□□□□□ -0.58
VRK3-224ENST00000601849 SMARCA5O60264 1052 aaPredicted RBP11.4□□□□□ -0.58
VRK3-224ENST00000601849 ADAMTS4O75173 837 aa11.4□□□□□ -0.58
VRK3-224ENST00000601849 TIMP1P01033 207 aa11.4□□□□□ -0.58
VRK3-224ENST00000601849 BMP3P12645 472 aa11.4□□□□□ -0.58
VRK3-224ENST00000601849 PPIGQ13427 754 aaKnown RBP eCLIP11.4□□□□□ -0.58
VRK3-224ENST00000601849 GNASQ5JWF2 1037 aa11.4□□□□□ -0.58
VRK3-224ENST00000601849 NOL8Q76FK4 1167 aaKnown RBP11.4□□□□□ -0.58
VRK3-224ENST00000601849 REPS2Q8NFH8 660 aa11.4□□□□□ -0.58
VRK3-224ENST00000601849 NUP88Q99567 741 aaPredicted RBP11.4□□□□□ -0.58
VRK3-224ENST00000601849 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.4□□□□□ -0.58
VRK3-224ENST00000601849 COL25A1Q9BXS0 654 aaPredicted RBP11.4□□□□□ -0.58
VRK3-224ENST00000601849 MTIF3Q9H2K0 278 aaKnown RBP11.4□□□□□ -0.58
VRK3-224ENST00000601849 SLC38A10Q9HBR0 1119 aa11.4□□□□□ -0.58
VRK3-224ENST00000601849 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.4□□□□□ -0.58
VRK3-224ENST00000601849 MTMR4Q9NYA4 1195 aa11.4□□□□□ -0.58
VRK3-224ENST00000601849 ROBO3Q96MS0 1386 aa11.4□□□□□ -0.59
VRK3-224ENST00000601849 SYNRGQ9UMZ2 1314 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 RLFQ13129 1914 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 DNAJC25-GNG10A0A024R161 153 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 GPAA1O43292 621 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 ZEB2O60315 1214 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 SNAI1O95863 264 aaPredicted RBP11.39□□□□□ -0.59
VRK3-224ENST00000601849 ASGR1P07306 291 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 STAT2P52630 851 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 FAAP100Q0VG06 881 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 CCDC144BQ3MJ40 725 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 SLFN13Q68D06 897 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 MFSD5Q6N075 450 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 CCDC129Q6ZRS4 1044 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 FAM160B2Q86V87 743 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 IFNL3Q8IZI9 196 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 GMCL1P1Q8NEA9 526 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 KLHDC9Q8NEP7 349 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 MYLIPQ8WY64 445 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 OSBP2Q969R2 916 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms