RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 UBE3CQ15386 1083 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 KCNA10Q16322 511 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 TMEM240Q5SV17 173 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 FAM83BQ5T0W9 1011 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 RPAP2Q8IXW5 612 aaPredicted RBP7.37□□□□□ -1.23
VRK3-220ENST00000600259 FTSJ3Q8IY81 847 aaKnown RBP7.37□□□□□ -1.23
VRK3-220ENST00000600259 CLASRPQ8N2M8 674 aaKnown RBP7.37□□□□□ -1.23
VRK3-220ENST00000600259 MSL3Q8N5Y2 521 aaKnown RBP7.37□□□□□ -1.23
VRK3-220ENST00000600259 RNPC3Q96LT9 517 aaKnown RBP7.37□□□□□ -1.23
VRK3-220ENST00000600259 DNAJC2Q99543 621 aaKnown RBP7.37□□□□□ -1.23
VRK3-220ENST00000600259 HAUS7Q99871 368 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.37□□□□□ -1.238e-11■■■■□ 20.6
VRK3-220ENST00000600259 KATNBL1Q9H079 304 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 PUS7LQ9H0K6 701 aaKnown RBP7.37□□□□□ -1.23
VRK3-220ENST00000600259 BOLA2Q9H3K6 86 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 SH2D4AQ9H788 454 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 ZBTB40Q9NUA8 1239 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 TMEM39AQ9NV64 488 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 PAG1Q9NWQ8 432 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 NYAP2Q9P242 653 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 BDP1A6H8Y1 2624 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 MUC3AQ02505 3323 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 ELP1O95163 1332 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 SYNGAP1Q96PV0 1343 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 SYNRGQ9UMZ2 1314 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 IGKV6D-41A0A0C4DH26 115 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 MOXD2PA6NHM9 499 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 GSG1L2A8MUP6 293 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 GRXCR1A8MXD5 290 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 F5H6K3 240 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 DUSP11O75319 330 aaKnown RBP7.36□□□□□ -1.23
VRK3-220ENST00000600259 RASA1P20936 1047 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 DNAJB2P25686 324 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 CST5P28325 142 aaPredicted RBP7.36□□□□□ -1.23
VRK3-220ENST00000600259 FPGSQ05932 587 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 KLRC3Q07444 240 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 KCTD2Q14681 263 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 SBK1Q52WX2 424 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 MFSD5Q6N075 450 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 ZNF467Q7Z7K2 595 aaPredicted RBP7.36□□□□□ -1.23
VRK3-220ENST00000600259 MKL1Q969V6 931 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 VWCEQ96DN2 955 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 STRBPQ96SI9 672 aaKnown RBP7.36□□□□□ -1.23
VRK3-220ENST00000600259 NUP88Q99567 741 aaPredicted RBP7.36□□□□□ -1.23
VRK3-220ENST00000600259 UPF3AQ9H1J1 476 aaKnown RBP7.36□□□□□ -1.23
VRK3-220ENST00000600259 ZNF576Q9H609 170 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 FAM184BQ9ULE4 1060 aa7.36□□□□□ -1.23
VRK3-220ENST00000600259 ZNFX1Q9P2E3 1918 aaKnown RBP7.36□□□□□ -1.23
VRK3-220ENST00000600259 NCOR1O75376 2440 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 DCDC2CA8MYV0 355 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 APBB1O00213 710 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 RAB11FIP3O75154 756 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 NDUFB10O96000 172 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 CD4P01730 458 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 ASGR1P07306 291 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 IFIT2P09913 472 aaKnown RBP7.35□□□□□ -1.23
VRK3-220ENST00000600259 COPB2P35606 906 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 PBX2P40425 430 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 GJA9P57773 515 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 ACVR2BQ13705 512 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 ADGRE1Q14246 886 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 PRPF38AQ8NAV1 312 aaKnown RBP7.35□□□□□ -1.23
VRK3-220ENST00000600259 SLC43A3Q8NBI5 491 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 NUP133Q8WUM0 1156 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 SLF1Q9BQI6 1058 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 TEX13BQ9BXU2 312 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 PBX4Q9BYU1 374 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 GOPCQ9HD26 462 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 STARD7Q9NQZ5 370 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 SLC4A4Q9Y6R1 1079 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 CHD7Q9P2D1 2997 aa7.35□□□□□ -1.23
VRK3-220ENST00000600259 ASTN1O14525 1302 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 GRIN2DO15399 1336 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 ARVCFO00192 962 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 ABCB7O75027 752 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 CSF2RAP15509 400 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 CCDC144BQ3MJ40 725 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 TJAP1Q5JTD0 557 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 AKNAD1Q5T1N1 836 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 SNRNP48Q6IEG0 339 aaKnown RBP7.34□□□□□ -1.23
VRK3-220ENST00000600259 GIMAP6Q6P9H5 292 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 ZNF365Q70YC5 407 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 FAM126BQ8IXS8 530 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 SYMPKQ92797 1274 aaKnown RBP7.34□□□□□ -1.23
VRK3-220ENST00000600259 OSBP2Q969R2 916 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 TIFAQ96CG3 184 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 DDX11Q96FC9 970 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 ABHD16BQ9H3Z7 469 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 SLC38A10Q9HBR0 1119 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.34□□□□□ -1.23
VRK3-220ENST00000600259 CNPY2Q9Y2B0 182 aa7.34□□□□□ -1.23
VRK3-220ENST00000600259 PARP14Q460N5 1801 aa7.34□□□□□ -1.24
VRK3-220ENST00000600259 NAV1Q8NEY1 1877 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 SOWAHBA6NEL2 793 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 ACRP10323 421 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 CYP2C18P33260 490 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 CNTN2Q02246 1040 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 PPIGQ13427 754 aaKnown RBP eCLIP7.33□□□□□ -1.24
VRK3-220ENST00000600259 GNASQ5JWF2 1037 aa7.33□□□□□ -1.24
VRK3-220ENST00000600259 CPXCR1Q8N123 301 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms