RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ARHGEF10LQ9HCE6 1279 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 XPNPEP3Q9NQH7 507 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 PAG1Q9NWQ8 432 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 CHD6Q8TD26 2715 aa10.43□□□□□ -0.74
SHKBP1-220ENST00000599716 STRNO43815 780 aa10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 PQBP1O60828 265 aaKnown RBP10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 FCER1AP12319 257 aa10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 SNX17Q15036 470 aa10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 C12orf60Q5U649 245 aa10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 PUS7LQ9H0K6 701 aaKnown RBP10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 MROH8Q9H579 483 aa10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 C11orf16Q9NQ32 467 aa10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 SLC4A4Q9Y6R1 1079 aa10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 PTPRZ1P23471 2315 aaPredicted RBP10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 MYH7P12883 1935 aa10.42□□□□□ -0.74
SHKBP1-220ENST00000599716 MCM3APO60318 1980 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 MYADML2A6NDP7 307 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 WDR46O15213 610 aaKnown RBP10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 IGSF3O75054 1194 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 PTGS1P23219 599 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 NHLH1Q02575 133 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 TSHZ3Q63HK5 1081 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 CTR9Q6PD62 1173 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 C16orf86Q6ZW13 317 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 MB21D1Q8N884 522 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 REPS2Q8NFH8 660 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 PPM1EQ8WY54 764 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 KIF1BPQ96EK5 621 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 TINF2Q9BSI4 451 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 SWAP70Q9UH65 585 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 ZNF214Q9UL59 606 aaPredicted RBP10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 RIPK3Q9Y572 518 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 CACNA1HO95180 2353 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 TRANK1O15050 2925 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 DCHS1Q96JQ0 3298 aa10.41□□□□□ -0.74
SHKBP1-220ENST00000599716 A0A1W2PQ45 241 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 A0A1W2PQY0 241 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 VWA5AO00534 786 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 ADCY6O43306 1168 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 ZNF865P0CJ78 1059 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 RARBP10826 455 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 BMP1P13497 986 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 STAT3P40763 770 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 ZNF792Q3KQV3 632 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 HSP90AB4PQ58FF6 505 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 GAS2L1Q99501 681 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 CXXC1Q9P0U4 656 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 PPP1R9AQ9ULJ8 1098 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 PHF24Q9UPV7 400 aa10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 DDX49Q9Y6V7 483 aaKnown RBP10.4□□□□□ -0.74
SHKBP1-220ENST00000599716 RIF1Q5UIP0 2472 aaKnown RBP10.4□□□□□ -0.75
SHKBP1-220ENST00000599716 WDR87Q6ZQQ6 2873 aa10.4□□□□□ -0.75
SHKBP1-220ENST00000599716 MYO9BQ13459 2157 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 SYNRGQ9UMZ2 1314 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 GRXCR1A8MXD5 290 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 ADAMTS4O75173 837 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 PRDM1O75626 825 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 CLTBP09497 229 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 ATP5JP18859 108 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 KCTD2Q14681 263 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 C20orf194Q5TEA3 1177 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 RIOX2Q8IUF8 465 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 ABRAQ8N0Z2 381 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 CPXCR1Q8N123 301 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 RNPC3Q96LT9 517 aaKnown RBP10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 HAUS7Q99871 368 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 SH2D4AQ9H788 454 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 ATP8A2Q9NTI2 1148 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 ZBTB40Q9NUA8 1239 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 SLC5A4Q9NY91 659 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 ZHX1Q9UKY1 873 aaPredicted RBP10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 ADAMTS5Q9UNA0 930 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 NCOR2Q9Y618 2525 aa10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 GREB1LQ9C091 1923 aaPredicted RBP10.39□□□□□ -0.75
SHKBP1-220ENST00000599716 MYO15AQ9UKN7 3530 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 ZBED9Q6R2W3 1325 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 MINDY4BA8MYZ0 360 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 RBAK-RBAKDNI3L0D1 243 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 SLC25A27O95847 323 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 SNAI1O95863 264 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 NDUFB10O96000 172 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 RAG1P15918 1043 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 KCNA4P22459 653 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 DNAJB2P25686 324 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 FAAP100Q0VG06 881 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 AAK1Q2M2I8 961 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 SNRNP48Q6IEG0 339 aaKnown RBP10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 RNF180Q86T96 592 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 LRRC47Q8N1G4 583 aaKnown RBP10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 CCDC17Q96LX7 622 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 TSPYL2Q9H2G4 693 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 ZNF576Q9H609 170 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 RAVER2Q9HCJ3 691 aaKnown RBP10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 EPB41L4AQ9HCS5 686 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 TMEM39AQ9NV64 488 aa10.38□□□□□ -0.75
SHKBP1-220ENST00000599716 MYH4Q9Y623 1939 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 FAM86C2PA6NEL3 165 aa10.37□□□□□ -0.75
SHKBP1-220ENST00000599716 RASA1P20936 1047 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms