RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.48■□□□□ 0.23
VRK3-217ENST00000599538 FILIP1Q7Z7B0 1213 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 CCDC148Q8NFR7 591 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 SPATA20Q8TB22 786 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 ZMYND12Q9H0C1 365 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 GPCPD1Q9NPB8 672 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 MPHOSPH10O00566 681 aaKnown RBP16.48■□□□□ 0.23
VRK3-217ENST00000599538 SLFN14P0C7P3 912 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 FMR1Q06787 632 aaKnown RBP eCLIP16.48■□□□□ 0.23
VRK3-217ENST00000599538 MORC3Q14149 939 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 TTBK2Q6IQ55 1244 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 SH3RF1Q7Z6J0 888 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 SMARCE1Q969G3 411 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 RRP36Q96EU6 259 aaKnown RBP16.48■□□□□ 0.23
VRK3-217ENST00000599538 PAGE5Q96GU1 130 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 MED15Q96RN5 788 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 RIOX1Q9H6W3 641 aa16.48■□□□□ 0.23
VRK3-217ENST00000599538 R3HCC1Q9Y3T6 440 aaKnown RBP16.48■□□□□ 0.23
VRK3-217ENST00000599538 SMCO2A6NFE2 343 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 SMTNL1A8MU46 457 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 SMC2O95347 1197 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 TTLL1O95922 423 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 SNHG28P0DPA3 235 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 MYL5Q02045 173 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 HSP90AA4PQ58FG1 418 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 DPF2Q92785 391 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 SWAP70Q9UH65 585 aa16.47■□□□□ 0.23
VRK3-217ENST00000599538 HLA-DOAP06340 250 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 ATP2B2Q01814 1243 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 E2F4Q16254 413 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 COA7Q96BR5 231 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 MTRQ99707 1265 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 TDRD3Q9H7E2 651 aaKnown RBP16.46■□□□□ 0.23
VRK3-217ENST00000599538 SPTLC3Q9NUV7 552 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 FANCLQ9NW38 375 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 HOOK1Q9UJC3 728 aaKnown RBP16.46■□□□□ 0.23
VRK3-217ENST00000599538 PP2D1A8MPX8 630 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 FKBP1AP62942 108 aaKnown RBP16.46■□□□□ 0.23
VRK3-217ENST00000599538 FANCCQ00597 558 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 TRMT44Q8IYL2 757 aaKnown RBP16.46■□□□□ 0.23
VRK3-217ENST00000599538 MRIQ9BWK5 157 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 TMEM260Q9NX78 707 aa16.46■□□□□ 0.23
VRK3-217ENST00000599538 GREB1LQ9C091 1923 aaPredicted RBP16.45■□□□□ 0.22
VRK3-217ENST00000599538 PPIP5K2O43314 1243 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 SLC16A2P36021 539 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 PTPN21Q16825 1174 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 GALNT17Q6IS24 598 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 KANK3Q6NY19 840 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 LRRC8AQ8IWT6 810 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 SEC63Q9UGP8 760 aaKnown RBP16.45■□□□□ 0.22
VRK3-217ENST00000599538 MYH4Q9Y623 1939 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 SMARCA1P28370 1054 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 ZNF543Q08ER8 600 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 ARL6IP4Q66PJ3 421 aaKnown RBP16.45■□□□□ 0.22
VRK3-217ENST00000599538 ZSCAN29Q8IWY8 852 aaPredicted RBP16.45■□□□□ 0.22
VRK3-217ENST00000599538 IDI2Q9BXS1 227 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 EHD4Q9H223 541 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 BLZF1Q9H2G9 400 aa16.45■□□□□ 0.22
VRK3-217ENST00000599538 BIN2Q9UBW5 565 aaPredicted RBP16.45■□□□□ 0.22
VRK3-217ENST00000599538 MYO3BQ8WXR4 1341 aa16.44■□□□□ 0.22
VRK3-217ENST00000599538 PPP1R11O60927 126 aaPredicted RBP16.44■□□□□ 0.22
VRK3-217ENST00000599538 DPYDQ12882 1025 aa16.44■□□□□ 0.22
VRK3-217ENST00000599538 ASPRV1Q53RT3 343 aa16.44■□□□□ 0.22
VRK3-217ENST00000599538 JAKMIP3Q5VZ66 844 aa16.44■□□□□ 0.22
VRK3-217ENST00000599538 KCTD1Q719H9 257 aa16.44■□□□□ 0.22
VRK3-217ENST00000599538 SMYD4Q8IYR2 804 aaPredicted RBP16.44■□□□□ 0.22
VRK3-217ENST00000599538 PRMT6Q96LA8 375 aaPredicted RBP16.44■□□□□ 0.22
VRK3-217ENST00000599538 CD44P16070 742 aaKnown RBP16.43■□□□□ 0.22
VRK3-217ENST00000599538 HDLBPQ00341 1268 aaKnown RBP16.43■□□□□ 0.22
VRK3-217ENST00000599538 KARSQ15046 597 aaKnown RBP16.43■□□□□ 0.22
VRK3-217ENST00000599538 PDXDC2PQ6P474 469 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 ADGRF4Q8IZF3 695 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 JMJD4Q9H9V9 463 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 SERPINA10Q9UK55 444 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 KCNA3P22001 575 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 LETM2Q2VYF4 491 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 CFAP100Q494V2 611 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 MLKLQ8NB16 471 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 C6orf50Q9HD87 102 aa16.43■□□□□ 0.22
VRK3-217ENST00000599538 COL4A5P29400 1685 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 EDIL3O43854 480 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 LONP1P36776 959 aaKnown RBP16.42■□□□□ 0.22
VRK3-217ENST00000599538 TPM4P67936 248 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 JAG1P78504 1218 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 SOGA3Q5TF21 947 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 TMC6Q7Z403 805 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 SIAH1Q8IUQ4 282 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 LRRC15Q8TF66 581 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 PI4KBQ9UBF8 816 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 NFE2L3Q9Y4A8 694 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 TMEM232C9JQI7 657 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 RAD21O60216 631 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 CCNT1O60563 726 aaKnown RBP16.42■□□□□ 0.22
VRK3-217ENST00000599538 GDF11O95390 407 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 EEF2P13639 858 aaKnown RBP16.42■□□□□ 0.22
VRK3-217ENST00000599538 GNA11P29992 359 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 CUL4BQ13620 913 aa16.42■□□□□ 0.22
VRK3-217ENST00000599538 NONOQ15233 471 aaKnown RBP eCLIP16.42■□□□□ 0.22
VRK3-217ENST00000599538 CERKLQ49MI3 558 aaPredicted RBP16.42■□□□□ 0.22
VRK3-217ENST00000599538 DNTTIP2Q5QJE6 756 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms