RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 USP6NLQ92738 828 aa16.29■□□□□ 0.2
UPF1-205ENST00000598209 ZSCAN10Q96SZ4 725 aaPredicted RBP16.29■□□□□ 0.2
UPF1-205ENST00000598209 MROH8Q9H579 483 aa16.29■□□□□ 0.2
UPF1-205ENST00000598209 ZNF214Q9UL59 606 aaPredicted RBP16.29■□□□□ 0.2
UPF1-205ENST00000598209 CTDP1Q9Y5B0 961 aaPredicted RBP16.29■□□□□ 0.2
UPF1-205ENST00000598209 PLXNA1Q9UIW2 1896 aa16.29■□□□□ 0.2
UPF1-205ENST00000598209 TNKSO95271 1327 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 E7EWF7 191 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 PLA2G6O60733 806 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 ZBED4O75132 1171 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 INHAP05111 366 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 XRCC5P13010 732 aaKnown RBP16.28■□□□□ 0.2
UPF1-205ENST00000598209 STAT3P40763 770 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 MAP2K5Q13163 448 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 GRB14Q14449 540 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 MTFR1Q15390 333 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 CYB5R4Q7L1T6 521 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 ENAHQ8N8S7 591 aaPredicted RBP16.28■□□□□ 0.2
UPF1-205ENST00000598209 ANKS1AQ92625 1134 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 APBA2Q99767 749 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 UBAC1Q9BSL1 405 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 TMEM106CQ9BVX2 250 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 SLC38A10Q9HBR0 1119 aa16.28■□□□□ 0.2
UPF1-205ENST00000598209 POTEFA5A3E0 1075 aa16.27■□□□□ 0.2
UPF1-205ENST00000598209 STRNO43815 780 aa16.27■□□□□ 0.2
UPF1-205ENST00000598209 PDHBP11177 359 aa16.27■□□□□ 0.2
UPF1-205ENST00000598209 SNRNP48Q6IEG0 339 aaKnown RBP16.27■□□□□ 0.2
UPF1-205ENST00000598209 STOX1Q6ZVD7 989 aa16.27■□□□□ 0.2
UPF1-205ENST00000598209 RALYLQ86SE5 291 aaKnown RBP16.27■□□□□ 0.2
UPF1-205ENST00000598209 CPXCR1Q8N123 301 aa16.27■□□□□ 0.2
UPF1-205ENST00000598209 NCOA7Q8NI08 942 aa16.27■□□□□ 0.2
UPF1-205ENST00000598209 TRIB2Q92519 343 aa16.27■□□□□ 0.2
UPF1-205ENST00000598209 TEX13BQ9BXU2 312 aa16.27■□□□□ 0.2
UPF1-205ENST00000598209 SMCHD1A6NHR9 2005 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 FRMPD2Q68DX3 1309 aaPredicted RBP16.26■□□□□ 0.19
UPF1-205ENST00000598209 SLC27A2O14975 620 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 ATP2A1O14983 1001 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 HMGCRP04035 888 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 FDX1P10109 184 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 CCL5P13501 91 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 COPB2P35606 906 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 RGS19P49795 217 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 NECTIN1Q15223 517 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 TTBK2Q6IQ55 1244 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 TRMT44Q8IYL2 757 aaKnown RBP16.26■□□□□ 0.19
UPF1-205ENST00000598209 PNMA1Q8ND90 353 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 KAT14Q9H8E8 782 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 RAVER2Q9HCJ3 691 aaKnown RBP16.26■□□□□ 0.19
UPF1-205ENST00000598209 GPCPD1Q9NPB8 672 aa16.26■□□□□ 0.19
UPF1-205ENST00000598209 SNHG28P0DPA3 235 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 FCER1AP12319 257 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 ZKSCAN1P17029 563 aaPredicted RBP16.25■□□□□ 0.19
UPF1-205ENST00000598209 ADORA2AP29274 412 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 SLC16A2P36021 539 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 SLC4A3P48751 1232 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 OAZ1P54368 228 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 ZNF543Q08ER8 600 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 SEC23AQ15436 765 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 CCL14Q16627 93 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 IFIT1BQ5T764 474 aaKnown RBP16.25■□□□□ 0.19
UPF1-205ENST00000598209 CREB3L3Q68CJ9 461 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 BTNL9Q6UXG8 535 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 ABRAQ8N0Z2 381 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 MMP19Q99542 508 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 RNF208Q9H0X6 261 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 UNC93B1Q9H1C4 597 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 PRR12Q9ULL5 1215 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 RIPK3Q9Y572 518 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 MYH6P13533 1939 aa16.25■□□□□ 0.19
UPF1-205ENST00000598209 HOXC6P09630 235 aa16.24■□□□□ 0.19
UPF1-205ENST00000598209 TRIM32Q13049 653 aa16.24■□□□□ 0.19
UPF1-205ENST00000598209 SYDE2Q5VT97 1194 aa16.24■□□□□ 0.19
UPF1-205ENST00000598209 DPP9Q86TI2 863 aa16.24■□□□□ 0.19
UPF1-205ENST00000598209 MB21D2Q8IYB1 491 aaPredicted RBP16.24■□□□□ 0.19
UPF1-205ENST00000598209 NPLOC4Q8TAT6 608 aa16.24■□□□□ 0.19
UPF1-205ENST00000598209 IFIT3O14879 490 aaKnown RBP16.23■□□□□ 0.19
UPF1-205ENST00000598209 COBLO75128 1261 aa16.23■□□□□ 0.19
UPF1-205ENST00000598209 EN2P19622 333 aaPredicted RBP16.23■□□□□ 0.19
UPF1-205ENST00000598209 SNAP25P60880 206 aa16.23■□□□□ 0.19
UPF1-205ENST00000598209 GPATCH4Q5T3I0 446 aaKnown RBP16.23■□□□□ 0.19
UPF1-205ENST00000598209 RNF20Q5VTR2 975 aa16.23■□□□□ 0.19
UPF1-205ENST00000598209 CCDC174Q6PII3 467 aa16.23■□□□□ 0.19
UPF1-205ENST00000598209 CHST3Q7LGC8 479 aa16.23■□□□□ 0.19
UPF1-205ENST00000598209 FLRT1Q9NZU1 646 aa16.23■□□□□ 0.19
UPF1-205ENST00000598209 ZNF536O15090 1300 aa16.22■□□□□ 0.19
UPF1-205ENST00000598209 ERICH2A1L162 156 aa16.22■□□□□ 0.19
UPF1-205ENST00000598209 GOLGA8HP0CJ92 632 aa16.22■□□□□ 0.19
UPF1-205ENST00000598209 ANTXR2P58335 489 aa16.22■□□□□ 0.19
UPF1-205ENST00000598209 KCTD2Q14681 263 aa16.22■□□□□ 0.19
UPF1-205ENST00000598209 SART3Q15020 963 aaKnown RBP16.22■□□□□ 0.19
UPF1-205ENST00000598209 AGBL1Q96MI9 1066 aa16.22■□□□□ 0.19
UPF1-205ENST00000598209 RANBP17Q9H2T7 1088 aaKnown RBP16.22■□□□□ 0.19
UPF1-205ENST00000598209 SLC5A4Q9NY91 659 aa16.22■□□□□ 0.19
UPF1-205ENST00000598209 GJB1P08034 283 aa16.21■□□□□ 0.19
UPF1-205ENST00000598209 PRKAR2AP13861 404 aaKnown RBP16.21■□□□□ 0.19
UPF1-205ENST00000598209 WTAPQ15007 396 aa16.21■□□□□ 0.19
UPF1-205ENST00000598209 ASPRV1Q53RT3 343 aa16.21■□□□□ 0.19
UPF1-205ENST00000598209 MAP3K21Q5TCX8 1036 aa16.21■□□□□ 0.19
UPF1-205ENST00000598209 MFSD14CQ5VZR4 134 aa16.21■□□□□ 0.19
UPF1-205ENST00000598209 CHST13Q8NET6 341 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms