RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 A0A0U1RQG5 324 aaPredicted RBP18.81■□□□□ 0.6
LIG1-214ENST00000597146 ARVCFO00192 962 aa18.81■□□□□ 0.6
LIG1-214ENST00000597146 RFXAPO00287 272 aa18.81■□□□□ 0.6
LIG1-214ENST00000597146 FGBP02675 491 aa18.81■□□□□ 0.6
LIG1-214ENST00000597146 POLR3DP05423 398 aaPredicted RBP18.81■□□□□ 0.6
LIG1-214ENST00000597146 GNAI3P08754 354 aa18.81■□□□□ 0.6
LIG1-214ENST00000597146 RIOX2Q8IUF8 465 aa18.81■□□□□ 0.6
LIG1-214ENST00000597146 MTIF3Q9H2K0 278 aaKnown RBP18.81■□□□□ 0.6
LIG1-214ENST00000597146 FBXO28Q9NVF7 368 aa18.81■□□□□ 0.6
LIG1-214ENST00000597146 TLR7Q9NYK1 1049 aaKnown RBP18.81■□□□□ 0.6
LIG1-214ENST00000597146 FAM184BQ9ULE4 1060 aa18.81■□□□□ 0.6
LIG1-214ENST00000597146 SCN5AQ14524 2016 aa18.8■□□□□ 0.6
LIG1-214ENST00000597146 SNAI1O95863 264 aaPredicted RBP18.8■□□□□ 0.6
LIG1-214ENST00000597146 CST5P28325 142 aaPredicted RBP18.8■□□□□ 0.6
LIG1-214ENST00000597146 HNRNPUQ00839 825 aaKnown RBP eCLIP18.8■□□□□ 0.6
LIG1-214ENST00000597146 KRT40Q6A162 431 aa18.8■□□□□ 0.6
LIG1-214ENST00000597146 SIAH1Q8IUQ4 282 aa18.8■□□□□ 0.6
LIG1-214ENST00000597146 VCPKMTQ9H867 229 aa18.8■□□□□ 0.6
LIG1-214ENST00000597146 TLR3O15455 904 aaKnown RBP18.79■□□□□ 0.6
LIG1-214ENST00000597146 DUSP11O75319 330 aaKnown RBP18.79■□□□□ 0.6
LIG1-214ENST00000597146 CT47B1P0C2W7 299 aaPredicted RBP18.79■□□□□ 0.6
LIG1-214ENST00000597146 TMEM179Q6ZVK1 233 aa18.79■□□□□ 0.6
LIG1-214ENST00000597146 CERS3Q8IU89 383 aa18.79■□□□□ 0.6
LIG1-214ENST00000597146 ZNF512BQ96KM6 892 aaPredicted RBP18.79■□□□□ 0.6
LIG1-214ENST00000597146 MTCH2Q9Y6C9 303 aa18.79■□□□□ 0.6
LIG1-214ENST00000597146 WDR46O15213 610 aaKnown RBP18.78■□□□□ 0.6
LIG1-214ENST00000597146 TLL1O43897 1013 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 IGSF3O75054 1194 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 CD4P01730 458 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 CYP2D6P10635 497 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 ICA1Q05084 483 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 PCSK9Q8NBP7 692 aaKnown RBP18.78■□□□□ 0.6
LIG1-214ENST00000597146 RIOK1Q9BRS2 568 aaKnown RBP18.78■□□□□ 0.6
LIG1-214ENST00000597146 ANTXR1Q9H6X2 564 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 CERS4Q9HA82 394 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 ARHGEF10LQ9HCE6 1279 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 GPR108Q9NPR9 543 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 DBNLQ9UJU6 430 aaKnown RBP18.78■□□□□ 0.6
LIG1-214ENST00000597146 ZNF214Q9UL59 606 aaPredicted RBP18.78■□□□□ 0.6
LIG1-214ENST00000597146 ADAMTS5Q9UNA0 930 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 TMX2Q9Y320 296 aa18.78■□□□□ 0.6
LIG1-214ENST00000597146 EPOPA6NHQ4 379 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 GPR37L1O60883 481 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 AKR1B1P15121 316 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 STAT3P40763 770 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 CCL23P55773 120 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 TRMT2AQ8IZ69 625 aaKnown RBP18.77■□□□□ 0.6
LIG1-214ENST00000597146 REPS2Q8NFH8 660 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 UPF3AQ9H1J1 476 aaKnown RBP18.77■□□□□ 0.6
LIG1-214ENST00000597146 HIPK3Q9H422 1215 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 MCM9Q9NXL9 1143 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 PCDHA11Q9Y5I1 949 aa18.77■□□□□ 0.6
LIG1-214ENST00000597146 ZBBXA8MT70 800 aa18.76■□□□□ 0.59
LIG1-214ENST00000597146 VWA5AO00534 786 aa18.76■□□□□ 0.59
LIG1-214ENST00000597146 GNASQ5JWF2 1037 aa18.76■□□□□ 0.59
LIG1-214ENST00000597146 DYNLL2Q96FJ2 89 aa18.76■□□□□ 0.59
LIG1-214ENST00000597146 WNT8AQ9H1J5 351 aa18.76■□□□□ 0.59
LIG1-214ENST00000597146 SLC4A7Q9Y6M7 1214 aa18.76■□□□□ 0.59
LIG1-214ENST00000597146 WDFY4Q6ZS81 3184 aa18.75■□□□□ 0.59
LIG1-214ENST00000597146 CTAGE5O15320 804 aa18.75■□□□□ 0.59
LIG1-214ENST00000597146 GTPBP6O43824 516 aaPredicted RBP18.75■□□□□ 0.59
LIG1-214ENST00000597146 GNAI2P04899 355 aa18.75■□□□□ 0.59
LIG1-214ENST00000597146 CA3P07451 260 aa18.75■□□□□ 0.59
LIG1-214ENST00000597146 GJA9P57773 515 aa18.75■□□□□ 0.59
LIG1-214ENST00000597146 OS9Q13438 667 aaPredicted RBP18.75■□□□□ 0.59
LIG1-214ENST00000597146 MAMDC4Q6UXC1 1216 aa18.75■□□□□ 0.59
LIG1-214ENST00000597146 MSL3Q8N5Y2 521 aaKnown RBP18.75■□□□□ 0.59
LIG1-214ENST00000597146 CCDC8Q9H0W5 538 aaPredicted RBP18.75■□□□□ 0.59
LIG1-214ENST00000597146 PPP1R9AQ9ULJ8 1098 aa18.75■□□□□ 0.59
LIG1-214ENST00000597146 PTPRSQ13332 1948 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 BEX3Q00994 111 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 ACVR2BQ13705 512 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 CCDC144BQ3MJ40 725 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 SDR42E1Q8WUS8 393 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 VWCEQ96DN2 955 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 SH2D4AQ9H788 454 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 SPC25Q9HBM1 224 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 CD320Q9NPF0 282 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.74■□□□□ 0.59
LIG1-214ENST00000597146 COG5Q9UP83 839 aa18.74■□□□□ 0.59
LIG1-214ENST00000597146 DNAJC25-GNG10A0A024R161 153 aa18.73■□□□□ 0.59
LIG1-214ENST00000597146 MAGEB6P1A0A0J9YX57 407 aa18.73■□□□□ 0.59
LIG1-214ENST00000597146 ARHGEF15O94989 841 aa18.73■□□□□ 0.59
LIG1-214ENST00000597146 ATP2A2P16615 1042 aaKnown RBP18.73■□□□□ 0.59
LIG1-214ENST00000597146 POU3F3P20264 500 aaPredicted RBP18.73■□□□□ 0.59
LIG1-214ENST00000597146 SCLYQ96I15 445 aa18.73■□□□□ 0.59
LIG1-214ENST00000597146 FGD4Q96M96 766 aa18.73■□□□□ 0.59
LIG1-214ENST00000597146 NOC4LQ9BVI4 516 aaKnown RBP18.73■□□□□ 0.59
LIG1-214ENST00000597146 TNNQ9UQP3 1299 aa18.73■□□□□ 0.59
LIG1-214ENST00000597146 RIPK3Q9Y572 518 aa18.73■□□□□ 0.59
LIG1-214ENST00000597146 TANC1Q9C0D5 1861 aa18.73■□□□□ 0.59
LIG1-214ENST00000597146 GREB1LQ9C091 1923 aaPredicted RBP18.72■□□□□ 0.59
LIG1-214ENST00000597146 SMIM22K7EJ46 135 aa18.72■□□□□ 0.59
LIG1-214ENST00000597146 IPO8O15397 1037 aaKnown RBP18.72■□□□□ 0.59
LIG1-214ENST00000597146 RAD21O60216 631 aa18.72■□□□□ 0.59
LIG1-214ENST00000597146 COPB2P35606 906 aa18.72■□□□□ 0.59
LIG1-214ENST00000597146 MRE11P49959 708 aa18.72■□□□□ 0.59
LIG1-214ENST00000597146 FAM83BQ5T0W9 1011 aa18.72■□□□□ 0.59
LIG1-214ENST00000597146 SNRNP48Q6IEG0 339 aaKnown RBP18.72■□□□□ 0.59
LIG1-214ENST00000597146 CXCL17Q6UXB2 119 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms