RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 MAMDC4Q6UXC1 1216 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 STRBPQ96SI9 672 aaKnown RBP11.97□□□□□ -0.49
LIG1-209ENST00000596104 SLF1Q9BQI6 1058 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 STARD7Q9NQZ5 370 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 TMEM39AQ9NV64 488 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 NYAP2Q9P242 653 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 ARPP21Q9UBL0 812 aaPredicted RBP11.97□□□□□ -0.49
LIG1-209ENST00000596104 TBX21Q9UL17 535 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 DDX19BQ9UMR2 479 aa11.97□□□□□ -0.49
LIG1-209ENST00000596104 MYADML2A6NDP7 307 aa11.96□□□□□ -0.49
LIG1-209ENST00000596104 MOXD2PA6NHM9 499 aa11.96□□□□□ -0.49
LIG1-209ENST00000596104 F5H6K3 240 aa11.96□□□□□ -0.49
LIG1-209ENST00000596104 RAD21O60216 631 aa11.96□□□□□ -0.49
LIG1-209ENST00000596104 IRX5P78411 483 aaPredicted RBP11.96□□□□□ -0.49
LIG1-209ENST00000596104 KLRC3Q07444 240 aa11.96□□□□□ -0.49
LIG1-209ENST00000596104 KCNA10Q16322 511 aa11.96□□□□□ -0.49
LIG1-209ENST00000596104 SNRNP48Q6IEG0 339 aaKnown RBP11.96□□□□□ -0.49
LIG1-209ENST00000596104 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.96□□□□□ -0.49
LIG1-209ENST00000596104 ZNF467Q7Z7K2 595 aaPredicted RBP11.96□□□□□ -0.49
LIG1-209ENST00000596104 FGD4Q96M96 766 aa11.96□□□□□ -0.49
LIG1-209ENST00000596104 FAM184BQ9ULE4 1060 aa11.96□□□□□ -0.49
LIG1-209ENST00000596104 PARP14Q460N5 1801 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 TTC28Q96AY4 2481 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 IGKV6D-41A0A0C4DH26 115 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 GSG1L2A8MUP6 293 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 DCDC2CA8MYV0 355 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 ADCY6O43306 1168 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 DUSP11O75319 330 aaKnown RBP11.95□□□□□ -0.5
LIG1-209ENST00000596104 DNAJB2P25686 324 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 CST5P28325 142 aaPredicted RBP11.95□□□□□ -0.5
LIG1-209ENST00000596104 CDK7P50613 346 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 GRIN2CQ14957 1233 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 ZSCAN25Q6NSZ9 544 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 GIMAP6Q6P9H5 292 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 PRPF38AQ8NAV1 312 aaKnown RBP11.95□□□□□ -0.5
LIG1-209ENST00000596104 NUP133Q8WUM0 1156 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 DDX11Q96FC9 970 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 ZHX1Q9UKY1 873 aaPredicted RBP11.95□□□□□ -0.5
LIG1-209ENST00000596104 VCANP13611 3396 aa11.95□□□□□ -0.5
LIG1-209ENST00000596104 EYSQ5T1H1 3165 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 ELP1O95163 1332 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.94□□□□□ -0.5
LIG1-209ENST00000596104 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.94□□□□□ -0.5
LIG1-209ENST00000596104 TIMP1P01033 207 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 ACVR2BQ13705 512 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 C16orf59Q7L2K0 433 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 CPXCR1Q8N123 301 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 USP38Q8NB14 1042 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 OSBP2Q969R2 916 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.94□□□□□ -0.51e-6■□□□□ 10.6
LIG1-209ENST00000596104 UPF3AQ9H1J1 476 aaKnown RBP11.94□□□□□ -0.5
LIG1-209ENST00000596104 SLC38A10Q9HBR0 1119 aa11.94□□□□□ -0.5
LIG1-209ENST00000596104 EPB41L4AQ9HCS5 686 aaPredicted RBP11.94□□□□□ -0.5
LIG1-209ENST00000596104 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.94□□□□□ -0.5
LIG1-209ENST00000596104 CTAGE5O15320 804 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 SMARCA5O60264 1052 aaPredicted RBP11.93□□□□□ -0.5
LIG1-209ENST00000596104 GJA9P57773 515 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 TMEM240Q5SV17 173 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 RASIP1Q5U651 963 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 MFSD5Q6N075 450 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 MIER1Q8N108 512 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 STK11IPQ8N1F8 1099 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 KBTBD3Q8NAB2 608 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 APPBP2Q92624 585 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 MKL1Q969V6 931 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 GLT1D1Q96MS3 346 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 LRRCC1Q9C099 1032 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 KATNBL1Q9H079 304 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 MKNK2Q9HBH9 465 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 RAVER2Q9HCJ3 691 aaKnown RBP11.93□□□□□ -0.5
LIG1-209ENST00000596104 CLIP2Q9UDT6 1046 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 PRUNE2Q8WUY3 3088 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 GREB1LQ9C091 1923 aaPredicted RBP11.93□□□□□ -0.5
LIG1-209ENST00000596104 BAZ2AQ9UIF9 1905 aaKnown RBP11.93□□□□□ -0.5
LIG1-209ENST00000596104 SPTBN5Q9NRC6 3674 aaKnown RBP11.93□□□□□ -0.5
LIG1-209ENST00000596104 SMCHD1A6NHR9 2005 aa11.93□□□□□ -0.5
LIG1-209ENST00000596104 CDH23Q9H251 3354 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 MROH7Q68CQ1 1323 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 MINDY4BA8MYZ0 360 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 ZBED4O75132 1171 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 ASGR1P07306 291 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 C6orf222P0C671 652 aaPredicted RBP11.92□□□□□ -0.5
LIG1-209ENST00000596104 NKX3-2P78367 333 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 CCDC144BQ3MJ40 725 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 FAM126BQ8IXS8 530 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 PCSK9Q8NBP7 692 aaKnown RBP11.92□□□□□ -0.5
LIG1-209ENST00000596104 CHST13Q8NET6 341 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 KIFC2Q96AC6 838 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 TIFAQ96CG3 184 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 CEP95Q96GE4 821 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 ABHD16BQ9H3Z7 469 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 ZNF576Q9H609 170 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 PRDM6Q9NQX0 595 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 ECHDC1Q9NTX5 307 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 MTMR4Q9NYA4 1195 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 SYNPO2Q9UMS6 1093 aa11.92□□□□□ -0.5
LIG1-209ENST00000596104 COL11A1P12107 1806 aaPredicted RBP11.91□□□□□ -0.5
LIG1-209ENST00000596104 A0A0U1RQG5 324 aaPredicted RBP11.91□□□□□ -0.5
LIG1-209ENST00000596104 ARVCFO00192 962 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 GPAA1O43292 621 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms