RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 RDXP35241 583 aaKnown RBP11.06□□□□□ -0.64
LIG3-216ENST00000593099 MYSM1Q5VVJ2 828 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 FAM173BQ6P4H8 233 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 UIMC1Q96RL1 719 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 AP5M1Q9H0R1 490 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 PRM3Q9NNZ6 103 aa11.06□□□□□ -0.64
LIG3-216ENST00000593099 DDNO94850 711 aaPredicted RBP11.05□□□□□ -0.64
LIG3-216ENST00000593099 ZNF157P51786 506 aaPredicted RBP11.05□□□□□ -0.64
LIG3-216ENST00000593099 CCDC173Q0VFZ6 552 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 OTUD6AQ7L8S5 288 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 SLFN12Q8IYM2 578 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 CDHR1Q96JP9 859 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 RABGAP1Q9Y3P9 1069 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 MRVI1Q9Y6F6 885 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 CCDC169A6NNP5 214 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 BTBD18B2RXH4 712 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 CELF2O95319 508 aaKnown RBP11.05□□□□□ -0.64
LIG3-216ENST00000593099 FBXO18Q8NFZ0 1043 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 TEKT3Q9BXF9 490 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 IL1R1P14778 569 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 SPAG1Q07617 926 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 KCNG1Q9UIX4 513 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 PCDHA12Q9UN75 941 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L15C9J2P7 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L13C9JLJ4 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L11C9JVI0 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L18D6R9N7 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L22D6RA61 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L17D6RBQ6 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L19D6RCP7 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L20D6RJB6 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 PRPF3O43395 683 aaKnown RBP11.05□□□□□ -0.64
LIG3-216ENST00000593099 USP17L24Q0WX57 530 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 PRAMEF18Q5VWM3 479 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 PRPF38AQ8NAV1 312 aaKnown RBP11.05□□□□□ -0.64
LIG3-216ENST00000593099 COA7Q96BR5 231 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 NT5C3AQ9H0P0 336 aa11.05□□□□□ -0.64
LIG3-216ENST00000593099 BCCIPQ9P287 314 aaKnown RBP eCLIP11.05□□□□□ -0.64
LIG3-216ENST00000593099 NEDD4P46934 1319 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 ANKRD13AQ8IZ07 590 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 PRMT6Q96LA8 375 aaPredicted RBP11.04□□□□□ -0.64
LIG3-216ENST00000593099 ZDHHC15Q96MV8 337 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 TMEM39BQ9GZU3 492 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 ZHX1Q9UKY1 873 aaPredicted RBP11.04□□□□□ -0.64
LIG3-216ENST00000593099 KCNH3Q9ULD8 1083 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 AKAP12Q02952 1782 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 A0A1B0GVL5 298 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 YEATS4O95619 227 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 IMPG2Q9BZV3 1241 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 TSPYL1Q9H0U9 437 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 DDX25Q9UHL0 483 aaKnown RBP11.04□□□□□ -0.64
LIG3-216ENST00000593099 PCDHA4Q9UN74 947 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 TRPC6Q9Y210 931 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 RGPD8O14715 1765 aaPredicted RBP11.04□□□□□ -0.64
LIG3-216ENST00000593099 C19orf81C9J6K1 198 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 HOXD10P28358 340 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 HMGCS2P54868 508 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 CABP7Q86V35 215 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 TPH2Q8IWU9 490 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 GPC2Q8N158 579 aa11.04□□□□□ -0.64
LIG3-216ENST00000593099 SPDYE2BA6NHP3 402 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 OR52Z1P0C646 297 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 SPDYE6P0CI01 402 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 SNAPC2Q13487 334 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 INCENPQ9NQS7 918 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 FAM205AQ6ZU69 1335 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 WDR19Q8NEZ3 1342 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 BICDL2A1A5D9 508 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 RPL13P26373 211 aaKnown RBP11.03□□□□□ -0.64
LIG3-216ENST00000593099 COPB2P35606 906 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 USP8P40818 1118 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 PPP1R2P41236 205 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 FAM160A1Q05DH4 1040 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 ENAHQ8N8S7 591 aaPredicted RBP11.03□□□□□ -0.64
LIG3-216ENST00000593099 ZNF280CQ8ND82 737 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 DRC1Q96MC2 740 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 GRPEL1Q9HAV7 217 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 KDM3AQ9Y4C1 1321 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 GCFC2P16383 781 aaKnown RBP11.03□□□□□ -0.64
LIG3-216ENST00000593099 AXDND1Q5T1B0 1012 aaPredicted RBP11.03□□□□□ -0.64
LIG3-216ENST00000593099 DPF2Q92785 391 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 FAM212AQ96EL1 285 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 CWC15Q9P013 229 aaKnown RBP11.03□□□□□ -0.64
LIG3-216ENST00000593099 N4BP3O15049 544 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 STRN3Q13033 797 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 RNF207Q6ZRF8 634 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 TMTC3Q6ZXV5 915 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 NSUN7Q8NE18 718 aaKnown RBP11.03□□□□□ -0.64
LIG3-216ENST00000593099 MMRN2Q9H8L6 949 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 MRC1P22897 1456 aa11.03□□□□□ -0.64
LIG3-216ENST00000593099 CCND2P30279 289 aa11.02□□□□□ -0.64
LIG3-216ENST00000593099 TRAPPC10P48553 1259 aa11.02□□□□□ -0.64
LIG3-216ENST00000593099 TAF1CQ15572 869 aaPredicted RBP11.02□□□□□ -0.64
LIG3-216ENST00000593099 FAM160B1Q5W0V3 765 aa11.02□□□□□ -0.64
LIG3-216ENST00000593099 SNRNP48Q6IEG0 339 aaKnown RBP11.02□□□□□ -0.64
LIG3-216ENST00000593099 CDAN1Q8IWY9 1227 aa11.02□□□□□ -0.64
LIG3-216ENST00000593099 LPAR1Q92633 364 aa11.02□□□□□ -0.64
LIG3-216ENST00000593099 SYT17Q9BSW7 474 aa11.02□□□□□ -0.64
LIG3-216ENST00000593099 GINM1Q9NU53 330 aa11.02□□□□□ -0.64
LIG3-216ENST00000593099 EXOC7Q9UPT5 735 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms