RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 MYH8P13535 1937 aa12.97□□□□□ -0.33
LIG3-214ENST00000592244 FOXP2O15409 715 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 PLA2G6O60733 806 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 FGRP09769 529 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 IRX6P78412 446 aaPredicted RBP12.96□□□□□ -0.33
LIG3-214ENST00000592244 IMMTQ16891 758 aaKnown RBP12.96□□□□□ -0.33
LIG3-214ENST00000592244 AKNAD1Q5T1N1 836 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 RCSD1Q6JBY9 416 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 CPXCR1Q8N123 301 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 NPLOC4Q8TAT6 608 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 DCAF4Q8WV16 495 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 STAG1Q8WVM7 1258 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 PAWRQ96IZ0 340 aaKnown RBP12.96□□□□□ -0.33
LIG3-214ENST00000592244 C11orf49Q9H6J7 331 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 SLC38A10Q9HBR0 1119 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 DDX20Q9UHI6 824 aaKnown RBP12.96□□□□□ -0.33
LIG3-214ENST00000592244 NRBP1Q9UHY1 535 aa12.96□□□□□ -0.33
LIG3-214ENST00000592244 TMEM232C9JQI7 657 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 TOP1P11387 765 aaKnown RBP12.95□□□□□ -0.34
LIG3-214ENST00000592244 MCCP23508 829 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 CCND3P30281 292 aaPredicted RBP12.95□□□□□ -0.34
LIG3-214ENST00000592244 CYP2C19P33261 490 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 SLC4A3P48751 1232 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 HAND2P61296 217 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 IQCA1Q86XH1 822 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 MSL3Q8N5Y2 521 aaKnown RBP12.95□□□□□ -0.34
LIG3-214ENST00000592244 CHST13Q8NET6 341 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 TTC14Q96N46 770 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 DSCC1Q9BVC3 393 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 TCP11L1Q9NUJ3 509 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 PNMA2Q9UL42 364 aa12.95□□□□□ -0.34
LIG3-214ENST00000592244 COBLO75128 1261 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 CCDC96Q2M329 555 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 TKFCQ3LXA3 575 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 TTC22Q5TAA0 569 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 ANKRD35Q8N283 1001 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 ARRDC4Q8NCT1 418 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 REPS2Q8NFH8 660 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 MAML3Q96JK9 1138 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 CNNM2Q9H8M5 875 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 FLRT1Q9NZU1 646 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 CNPY2Q9Y2B0 182 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 DOCK3Q8IZD9 2030 aa12.94□□□□□ -0.34
LIG3-214ENST00000592244 RAD50Q92878 1312 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 H0YGN5 161 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 SEPT4O43236 478 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 CYBAP13498 195 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 LHX8Q68G74 356 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 KRT23Q9C075 422 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 RAVER2Q9HCJ3 691 aaKnown RBP12.93□□□□□ -0.34
LIG3-214ENST00000592244 INCENPQ9NQS7 918 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 IL17RBQ9NRM6 502 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 MTMR7Q9Y216 660 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 BRCA2P51587 3418 aa12.93□□□□□ -0.34
LIG3-214ENST00000592244 MKI67P46013 3256 aaKnown RBP12.93□□□□□ -0.34
LIG3-214ENST00000592244 KBTBD13C9JR72 458 aa12.92□□□□□ -0.34
LIG3-214ENST00000592244 NMT2O60551 498 aa12.92□□□□□ -0.34
LIG3-214ENST00000592244 PGK2P07205 417 aa12.92□□□□□ -0.34
LIG3-214ENST00000592244 NOVP48745 357 aa12.92□□□□□ -0.34
LIG3-214ENST00000592244 TRDNQ13061 729 aa12.92□□□□□ -0.34
LIG3-214ENST00000592244 ZNF792Q3KQV3 632 aa12.92□□□□□ -0.34
LIG3-214ENST00000592244 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.92□□□□□ -0.34
LIG3-214ENST00000592244 ZNF467Q7Z7K2 595 aaPredicted RBP12.92□□□□□ -0.34
LIG3-214ENST00000592244 TINF2Q9BSI4 451 aa12.92□□□□□ -0.34
LIG3-214ENST00000592244 ACAD9Q9H845 621 aa12.92□□□□□ -0.34
LIG3-214ENST00000592244 DNM1LO00429 736 aa12.91□□□□□ -0.34
LIG3-214ENST00000592244 RARBP10826 455 aa12.91□□□□□ -0.34
LIG3-214ENST00000592244 GPATCH4Q5T3I0 446 aaKnown RBP12.91□□□□□ -0.34
LIG3-214ENST00000592244 KCTD1Q719H9 257 aa12.91□□□□□ -0.34
LIG3-214ENST00000592244 DGKHQ86XP1 1220 aa12.91□□□□□ -0.34
LIG3-214ENST00000592244 DIS3LQ8TF46 1054 aaKnown RBP12.91□□□□□ -0.34
LIG3-214ENST00000592244 TMEM47Q9BQJ4 181 aa12.91□□□□□ -0.34
LIG3-214ENST00000592244 UBAC1Q9BSL1 405 aa12.91□□□□□ -0.34
LIG3-214ENST00000592244 U3KPZ7 1027 aaPredicted RBP12.91□□□□□ -0.34
LIG3-214ENST00000592244 GREB1LQ9C091 1923 aaPredicted RBP12.91□□□□□ -0.34
LIG3-214ENST00000592244 A0A0G2JMZ2 1700 aa12.91□□□□□ -0.34
LIG3-214ENST00000592244 PFASO15067 1338 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 SYNGAP1Q96PV0 1343 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 ZNF236Q9UL36 1845 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 POTEB2H3BUK9 544 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 IGHA2P01877 340 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 PDE4AP27815 886 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 TBC1D10CQ8IV04 446 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 KAT14Q9H8E8 782 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 HOMER2Q9NSB8 354 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 RNF146Q9NTX7 359 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 CCPG1Q9ULG6 757 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 PRR12Q9ULL5 1215 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 PLXNB2O15031 1838 aa12.9□□□□□ -0.34
LIG3-214ENST00000592244 KDM4AO75164 1064 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 MYCNP04198 464 aaPredicted RBP12.89□□□□□ -0.35
LIG3-214ENST00000592244 ICAM1P05362 532 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 ALAS1P13196 640 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 AKR1A1P14550 325 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 GSPT1P15170 499 aaKnown RBP12.89□□□□□ -0.35
LIG3-214ENST00000592244 HABP4Q5JVS0 413 aaKnown RBP12.89□□□□□ -0.35
LIG3-214ENST00000592244 SYDE2Q5VT97 1194 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 CCDC174Q6PII3 467 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 BTNL9Q6UXG8 535 aa12.89□□□□□ -0.35
LIG3-214ENST00000592244 KIAA1211Q6ZU35 1233 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms