RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 ADCY3O60266 1144 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 ZBED4O75132 1171 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 SNHG28P0DPA3 235 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 PDHBP11177 359 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 XRCC5P13010 732 aaKnown RBP13.96□□□□□ -0.17
LIG3-213ENST00000590630 ERCC3P19447 782 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 GRK4P32298 578 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 STAT3P40763 770 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 OAZ1P54368 228 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 CCDC96Q2M329 555 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 IFIT1BQ5T764 474 aaKnown RBP13.96□□□□□ -0.17
LIG3-213ENST00000590630 WDR78Q5VTH9 848 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 KCTD1Q719H9 257 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 CYB5R4Q7L1T6 521 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 RIOX2Q8IUF8 465 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 PNMA1Q8ND90 353 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 ZNF333Q96JL9 665 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 TEX13BQ9BXU2 312 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 SLC38A10Q9HBR0 1119 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 MTMR7Q9Y216 660 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 CTDP1Q9Y5B0 961 aaPredicted RBP13.96□□□□□ -0.17
LIG3-213ENST00000590630 ERICH2A1L162 156 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 SLC15A5A6NIM6 579 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 ZNF543Q08ER8 600 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 GRB14Q14449 540 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 SEC23AQ15436 765 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 MORN1Q5T089 497 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 GPATCH4Q5T3I0 446 aaKnown RBP13.95□□□□□ -0.18
LIG3-213ENST00000590630 RASGRP2Q7LDG7 609 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 NCAPG2Q86XI2 1143 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 MB21D2Q8IYB1 491 aaPredicted RBP13.95□□□□□ -0.18
LIG3-213ENST00000590630 SH3TC2Q8TF17 1288 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 USP6NLQ92738 828 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 CHMP4CQ96CF2 233 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 MTA3Q9BTC8 594 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 MKI67P46013 3256 aaKnown RBP13.95□□□□□ -0.18
LIG3-213ENST00000590630 MYH6P13533 1939 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 PLXNA1Q9UIW2 1896 aa13.95□□□□□ -0.18
LIG3-213ENST00000590630 IFIT3O14879 490 aaKnown RBP13.94□□□□□ -0.18
LIG3-213ENST00000590630 EPB41L2O43491 1005 aaKnown RBP13.94□□□□□ -0.18
LIG3-213ENST00000590630 CAPN15O75808 1086 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 ZKSCAN1P17029 563 aaPredicted RBP13.94□□□□□ -0.18
LIG3-213ENST00000590630 PTPREP23469 700 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 MCM5P33992 734 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 RGS2P41220 211 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 MAP2K5Q13163 448 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 TSGA10IPQ3SY00 556 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 SNRNP48Q6IEG0 339 aaKnown RBP13.94□□□□□ -0.18
LIG3-213ENST00000590630 BTNL9Q6UXG8 535 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 TRMT44Q8IYL2 757 aaKnown RBP13.94□□□□□ -0.18
LIG3-213ENST00000590630 ABRAQ8N0Z2 381 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 APBA2Q99767 749 aa13.94□□□□□ -0.18
LIG3-213ENST00000590630 FRMPD2Q68DX3 1309 aaPredicted RBP13.93□□□□□ -0.18
LIG3-213ENST00000590630 HOXC6P09630 235 aa13.93□□□□□ -0.18
LIG3-213ENST00000590630 ELNP15502 786 aa13.93□□□□□ -0.18
LIG3-213ENST00000590630 KRT32Q14532 448 aa13.93□□□□□ -0.18
LIG3-213ENST00000590630 WTAPQ15007 396 aa13.93□□□□□ -0.18
LIG3-213ENST00000590630 ASPRV1Q53RT3 343 aa13.93□□□□□ -0.18
LIG3-213ENST00000590630 BIN2Q9UBW5 565 aaPredicted RBP13.93□□□□□ -0.18
LIG3-213ENST00000590630 PRR12Q9ULL5 1215 aa13.93□□□□□ -0.18
LIG3-213ENST00000590630 SMCHD1A6NHR9 2005 aa13.93□□□□□ -0.18
LIG3-213ENST00000590630 HMGCRP04035 888 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 FCER1AP12319 257 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 CYP2B6P20813 491 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 ADORA2AP29274 412 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 ANTXR2P58335 489 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 UBXN2AP68543 259 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 TMEM67Q5HYA8 995 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 SYDE2Q5VT97 1194 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 TTBK2Q6IQ55 1244 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 CHST3Q7LGC8 479 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 CPXCR1Q8N123 301 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 TMEM87BQ96K49 555 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 RAVER2Q9HCJ3 691 aaKnown RBP13.92□□□□□ -0.18
LIG3-213ENST00000590630 GPCPD1Q9NPB8 672 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 SLC5A4Q9NY91 659 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 FBXO40Q9UH90 709 aa13.92□□□□□ -0.18
LIG3-213ENST00000590630 PRC1O43663 620 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 INHAP05111 366 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 PARP1P09874 1014 aaKnown RBP13.91□□□□□ -0.18
LIG3-213ENST00000590630 HSPA4P34932 840 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 SLC16A2P36021 539 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 KCTD2Q14681 263 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.91□□□□□ -0.18
LIG3-213ENST00000590630 DPP9Q86TI2 863 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 TMTC2Q8N394 836 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 CHST13Q8NET6 341 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 IGDCC4Q8TDY8 1250 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 TRIB2Q92519 343 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 KCNB2Q92953 911 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 RANBP17Q9H2T7 1088 aaKnown RBP13.91□□□□□ -0.18
LIG3-213ENST00000590630 PNMA2Q9UL42 364 aa13.91□□□□□ -0.18
LIG3-213ENST00000590630 ZNF536O15090 1300 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 WDR19Q8NEZ3 1342 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 ICAM1P05362 532 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 HMGB1P09429 215 aaKnown RBP13.9□□□□□ -0.18
LIG3-213ENST00000590630 GOLGA8HP0CJ92 632 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 TKFCQ3LXA3 575 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 CATIPQ7Z7H3 387 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 RASEFQ8IZ41 740 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms