RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ARMC5Q96C12 935 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 FAM227BQ96M60 508 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 FEZ1Q99689 392 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.39□□□□□ -0.27
SMAD4-211ENST00000590499 HELLSQ9NRZ9 838 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 PTCH2Q9Y6C5 1203 aa13.39□□□□□ -0.27
SMAD4-211ENST00000590499 MPHOSPH10O00566 681 aaKnown RBP13.38□□□□□ -0.27
SMAD4-211ENST00000590499 VCAM1P19320 739 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 RASA1P20936 1047 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 FECHP22830 423 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 TDO2P48775 406 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 RGS19P49795 217 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 PRMT2P55345 433 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 IRX3P78415 501 aaPredicted RBP13.38□□□□□ -0.27
SMAD4-211ENST00000590499 ZYXQ15942 572 aaKnown RBP13.38□□□□□ -0.27
SMAD4-211ENST00000590499 LCE2AQ5TA79 106 aaPredicted RBP13.38□□□□□ -0.27
SMAD4-211ENST00000590499 MORF4L1Q9UBU8 362 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 SRRDQ9UH36 339 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 PCDHB3Q9Y5E6 796 aa13.38□□□□□ -0.27
SMAD4-211ENST00000590499 PLXNB2O15031 1838 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 A0A0G2JMZ2 1700 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 MINDY4BA8MYZ0 360 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 APPP05067 770 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 FCGRTP55899 365 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 HERVK_113P62684 666 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 ICA1Q05084 483 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 KIAA1755Q5JYT7 1200 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 VPS53Q5VIR6 699 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 PXYLP1Q8TE99 480 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 P2RX7Q99572 595 aaKnown RBP13.37□□□□□ -0.27
SMAD4-211ENST00000590499 NACAP1Q9BZK3 213 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 TXNRD2Q9NNW7 524 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 MYH4Q9Y623 1939 aa13.37□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L15C9J2P7 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L13C9JLJ4 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L11C9JVI0 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L18D6R9N7 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L22D6RA61 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L17D6RBQ6 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L19D6RCP7 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L20D6RJB6 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 FMNL1O95466 1100 aaPredicted RBP13.36□□□□□ -0.27
SMAD4-211ENST00000590499 USP17L24Q0WX57 530 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 NMIQ13287 307 aaPredicted RBP13.36□□□□□ -0.27
SMAD4-211ENST00000590499 MCMDC2Q4G0Z9 681 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 BLOC1S3Q6QNY0 202 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 CATSPERGQ6ZRH7 1159 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 ZNF589Q86UQ0 364 aaPredicted RBP13.36□□□□□ -0.27
SMAD4-211ENST00000590499 NAPBQ9H115 298 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 TMX2Q9Y320 296 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 MYPNQ86TC9 1320 aa13.36□□□□□ -0.27
SMAD4-211ENST00000590499 PLIN4Q96Q06 1357 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 IGKV6D-41A0A0C4DH26 115 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 PEX10O60683 326 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 SDSP20132 328 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 HOXD10P28358 340 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 SOX10P56693 466 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 PRKCZQ05513 592 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 PPARAQ07869 468 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 ALX1Q15699 326 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 LBX2Q6XYB7 198 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 LIAT1Q6ZQX7 453 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 ANKLE1Q8NAG6 615 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 GTF3C2Q8WUA4 911 aaPredicted RBP13.35□□□□□ -0.27
SMAD4-211ENST00000590499 RILPL2Q969X0 211 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 ZNF333Q96JL9 665 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 KANSL2Q9H9L4 492 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 ARHGEF10LQ9HCE6 1279 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 RBPJLQ9UBG7 517 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 ZMYM6O95789 1325 aa13.35□□□□□ -0.27
SMAD4-211ENST00000590499 LAMA4Q16363 1823 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 PDE4DIPQ5VU43 2346 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 PRDM1O75626 825 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 CNMDO75829 334 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 EEF2P13639 858 aaKnown RBP13.34□□□□□ -0.27
SMAD4-211ENST00000590499 GSPT1P15170 499 aaKnown RBP13.34□□□□□ -0.27
SMAD4-211ENST00000590499 TTC22Q5TAA0 569 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 TREML4Q6UXN2 200 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 METTL3Q86U44 580 aaKnown RBP13.34□□□□□ -0.27
SMAD4-211ENST00000590499 GPIHBP1Q8IV16 184 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 STK11IPQ8N1F8 1099 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 LPAR1Q92633 364 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 PRR14Q9BWN1 585 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 RPAP3Q9H6T3 665 aaPredicted RBP13.34□□□□□ -0.27
SMAD4-211ENST00000590499 SH2D4AQ9H788 454 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 VCPKMTQ9H867 229 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 MKNK2Q9HBH9 465 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 ANAPC4Q9UJX5 808 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 GABRQQ9UN88 632 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.34□□□□□ -0.27
SMAD4-211ENST00000590499 TACC3Q9Y6A5 838 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 CCDC171Q6TFL3 1326 aa13.34□□□□□ -0.27
SMAD4-211ENST00000590499 TNPO2O14787 897 aaKnown RBP13.33□□□□□ -0.28
SMAD4-211ENST00000590499 TLL1O43897 1013 aa13.33□□□□□ -0.28
SMAD4-211ENST00000590499 HSPD1P10809 573 aaKnown RBP13.33□□□□□ -0.28
SMAD4-211ENST00000590499 ERVK-9P63128 1117 aa13.33□□□□□ -0.28
SMAD4-211ENST00000590499 ERVK-24P63145 666 aa13.33□□□□□ -0.28
SMAD4-211ENST00000590499 Q3C1V9 767 aa13.33□□□□□ -0.28
SMAD4-211ENST00000590499 SLC9C1Q4G0N8 1177 aa13.33□□□□□ -0.28
SMAD4-211ENST00000590499 GPRC5AQ8NFJ5 357 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms